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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcgttttcctccgctgcgtctcttcgtttcgaacggttgtggatttcgcttcgacattttgtgttctgacttggttttggtggaaatcgcag

Basic information

species Oryza sativa
transcript LOC_Os09g37910.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G162284_T02 (Zea mays), 5'ss of exon 4
GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcgttttcctccgctgcgtctcttcgtttcgaacggttgtgg-atttcgcttcgacatt----ttg--tgttctgacttggttttggtggaaatcgcag------------------------------
|||| |||||||||||||||||||||||||||||||||| || || || ||||| |||||||| || ||||    |  |      || | |||||||| | | |||     |  || |  ||||    |||  |||||    || | |    || || |  |                                
GGAGGAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAATGTGAAACAAGTCTCAGTGgtaagtgttgtttcatccatcattccttcattgtttcgaatgttagtgatgcatgactccttcattggatttgaatgttcgtgatttgctgacatgaaacttccgtttctgatgtttgttactttgtggatgtcag

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G066528_T02 (Zea mays), 5'ss of exon 4
GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcgttttcctccgctgcgtctcttcgtttcgaacggttgtgg-atttcgcttcgacattttgtgttctgacttggttttgg---tggaaatcgcag
|||| |||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||    |  |||     | ||||  |||| ||||||   | ||||      | |  || ||||    |||||| || || |||    ||  |||  |||
GGAGGAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAATGTGAAGCAAGTCTCCGTGgtaagctgtttcatccatgatttcgtca-ttcgattcgaatattcgtggcggcctgttatgatatttgcgtttctgattttgtgttgtgtttgtgaatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88903838|gb|CI711540.1|CI711540
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|701299|gb|D47590.1|D47590
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|55414429|gb|CV726805.1|CV726805
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33663560|gb|CF294527.1|CF294527
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|86829841|gb|CI288535.1|CI288535
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|55435413|gb|CV730838.1|CV730838
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|55439165|gb|CV732884.1|CV732884
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATG
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATG
EST: gi|86829652|gb|CI286813.1|CI286813
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     TCAGGAAGGACTACAAGGAGAACCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33664035|gb|CF295002.1|CF295002
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|572169|gb|D41680.1|D41680
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88666280|gb|CI716436.1|CI716436
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|701542|gb|D47833.1|D47833
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33691038|gb|CF319277.1|CF319277
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33655319|gb|CF277933.1|CF277933
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|15008575|gb|AU222963.1|AU222963
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33655325|gb|CF277939.1|CF277939
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTGAC
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTGAC
EST: gi|88336088|gb|CI647282.1|CI647282
EST:     CCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|55438827|gb|CV732712.1|CV732712
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88595104|gb|CI715260.1|CI715260
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88666063|gb|CI716219.1|CI716219
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88720160|gb|CI745250.1|CI745250
EST:     CAGGAAGGACTACAAGGAGAAGCACCCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: CAGGAAGGACTACAAGGAGAAGCACCCC-AACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88352919|gb|CI678953.1|CI678953
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88341443|gb|CI635641.1|CI635641
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88409966|gb|CI571223.1|CI571223
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88904434|gb|CI711742.1|CI711742
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAACCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|163926292|gb|EG712876.1|EG712876
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33665089|gb|CF296056.1|CF296056
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTGA
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTGA
EST: gi|88576662|gb|CI670807.1|CI670807
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33683487|gb|CF311726.1|CF311726
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|24208407|gb|AU225434.1|AU225434
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|4878390|gb|AU062689.1|AU062689
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88571600|gb|CI662973.1|CI662973
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|569750|gb|D40599.1|D40599
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33659238|gb|CF281851.1|CF281851
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|11863289|gb|AU065278.2|AU065278
EST:     TCANGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTNGCAAGGCTGGTGGTGACAAGTGGTAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33665399|gb|CF296366.1|CF296366
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33823174|gb|CF337387.1|CF337387
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|55437048|gb|CV731721.1|CV731721
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|88955287|gb|CI721859.1|CI721859
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
EST: gi|33662889|gb|CF293856.1|CF293856
EST:     TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG                         ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT
genomic: TCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcg ... gaaatcgcagATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTGgtaagcgtcgttttcctccgctgcgtctcttcgtttcgaacggttgtggatttcgcttcgacattttgtgttctgacttggttttggtggaaatcgcag

- - - - - - - - - - - AAGGAG
- - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - AGAAGC