1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCAATGCTAGTTTGGATGTTGATGACAAGGTTAAATCTGAAAACAGTTCTGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaataaccatgactttttttgaaaagcacatttcacacaatccgattaggtactcaagaaaatatacttcttttctgtgcag
species | Oryza sativa |
transcript | LOC_Os09g36190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTG CTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGGEST: gi|86831839|gb|CI303279.1|CI303279
genomic: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaat ... ttctgtgcagCTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGG
EST: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTG CTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGGEST: gi|29628540|gb|CB633551.1|CB633551
genomic: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaat ... ttctgtgcagCTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGG
EST: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTG CTGAACATCAAGTCGATGCAGCTGCAAAAAATGCTCGAAGGEST: gi|25801297|gb|CA757258.1|CA757258
genomic: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaat ... ttctgtgcagCTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGG
EST: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTG CTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGGEST: gi|29682192|gb|CB678467.1|CB678467
genomic: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaat ... ttctgtgcagCTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGG
EST: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTG CTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGG
genomic: TGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaat ... ttctgtgcagCTGAACATCAAGTCGATGCACCTGCAAAAAATGCTCGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATGCTAGTTTGGATGTTGATGACAAGGTTAAATCTGAAAACAGTTCTGCAGAACATGAGTTATCACTGACAGATAAAACACCCAAGGATGATACTGgtataaaaataaccatgactttttttgaaaagcacatttcacacaatccgattaggtactcaagaaaatatacttcttttctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG