Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTGTGCTGTTTGCCGGGAGAGCTTGCTGGTGGACGACAAGATGCAGGAGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtccacataacccctttgaatcatctgaaagtagcctcgacgcatcgttacaactcggtgtagctgaacattatacccatcatggttgtgttgtgttgcacgcag

Basic information

species Oryza sativa
transcript LOC_Os09g26400.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g26400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G140160_T03 (Zea mays), 5'ss of exon 5
TCAGTGTGCTGTTTGCCGGGAGAGCTTGCTGGTGGACGACAAGATGCAGGAGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtccacataacccctt----tgaatcatctgaaagtagcctcgacgcatcgttacaactcggtgtagctgaacattatacccatcatggttgtgttgtgttgcacgcag
  |||||||||| ||||| || | |||| | ||||| ||||||||||||||||| || ||||||||||| ||||| ||||  || || ||||||||||||||||  | |   | | ||||     | |||   ||  ||||||    |  |||| ||| ||| ||||| || || | ||        ||| || || | || |||| ||   ||
GGAGTGTGCTGTCTGCCGCGAAAACTTGGTTGTGGATGACAAGATGCAGGAGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTGgtaaacttcttgtgaaccctgcagataaataggcttgaagtagaggagcagcattgttgcaa-tcggtatatctaacca--------atcgtgatttt-ttttgtttcatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89197951|gb|CI117429.1|CI117429
EST:     GCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: GCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86254767|gb|CI061078.1|CI061078
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88833722|gb|CI077203.1|CI077203
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|33808700|gb|CF330235.1|CF330235
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86843687|gb|CI339688.1|CI339688
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88257338|gb|CI359726.1|CI359726
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88507773|gb|CI435279.1|CI435279
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|33822186|gb|CF336908.1|CF336908
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|33811910|gb|CF331844.1|CF331844
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|7212564|gb|AU082867.1|AU082867
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88271938|gb|CI387991.1|CI387991
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88202297|gb|CI201159.1|CI201159
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88266971|gb|CI378906.1|CI378906
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCAGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86523001|gb|CI163207.1|CI163207
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88259748|gb|CI364041.1|CI364041
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86494546|gb|CI137179.1|CI137179
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86426247|gb|CI071344.1|CI071344
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88834610|gb|CI077893.1|CI077893
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88266761|gb|CI377663.1|CI377663
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88437506|gb|CI531065.1|CI531065
EST:     AGCTACCGTGCAAGCATGTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGGTGA-GAGCGGACGA
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGA-CGGACGA
EST: gi|38479498|gb|CF963609.1|CF963609
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|8404538|gb|AU091892.1|AU091892
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88439079|gb|CI551930.1|CI551930
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88446091|gb|CI552597.1|CI552597
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88977784|gb|CI384266.1|CI384266
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|15853332|gb|BI806128.1|BI806128
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88215495|gb|CI215344.1|CI215344
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88200062|gb|CI199912.1|CI199912
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGTAGCTGAGGACGGACGA
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACG-AGCTGAGGACGGACGA
EST: gi|88215865|gb|CI215714.1|CI215714
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|33805222|gb|CF328488.1|CF328488
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|87026417|gb|CI252371.1|CI252371
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86505113|gb|CI147746.1|CI147746
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|29668875|gb|CB665150.1|CB665150
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|87033377|gb|CI188001.1|CI188001
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88989954|gb|CI018831.1|CI018831
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|29663239|gb|CB659514.1|CB659514
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88835815|gb|CI370920.1|CI370920
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         TACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86539530|gb|CI179736.1|CI179736
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88205476|gb|CI205325.1|CI205325
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88201771|gb|CI202126.1|CI202126
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88223604|gb|CI223453.1|CI223453
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88475075|gb|CI412346.1|CI412346
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88256692|gb|CI359080.1|CI359080
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|86511777|gb|CI154410.1|CI154410
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|33689201|gb|CF317440.1|CF317440
EST:     TTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTACCGGCACGAGCTGAGGACGGACGAC
genomic: TTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
EST: gi|88224649|gb|CI224498.1|CI224498
EST:     AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTG                         GACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC
genomic: AGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 68 (upstream exon), 37 (downstream exon)
Score: 12

TCAGTGTGCTGTTTGCCGGGAGAGCTTGCTGGTGGACGACAAGATGCAGGAGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGgtaatgtcca ... ttgcacgcagGACGAGAACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGACCATGTGTACGAGAGCCGGAAGGAGCGGGAGCGAGAAGAGGAGGAAGACA




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