1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CATCAGGGGGCTCTATTATGACAGATTAAAAGGTTGCCTTTTGAAGCTTGATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAGgtgatacattcactcattcatattttttatgttcaaatgtaaataagtattttcttaatataatcttataattatgttagtgattggttgccttgtactg...
species | Oryza sativa |
transcript | LOC_Os09g25640.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAG CTGAGTTTGAGTGAGATAAAAGAACTCTATGGCACACGGCATATTGGCAEST: gi|66919224|gb|CX106072.1|CX106072
genomic: ATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAGgtgatacatt ... tcttgatcagCTGAGTTTGAGTGAGATAAAAGAACTCTATGGCACACGGCATATTGGCA
EST: ATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAG CTGAGTTTGAGTGAGATAAAAGAACTCTATGGCACACGGCATATTGGCAGAEST: gi|58672907|gb|CK061593.1|CK061593
genomic: ATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAGgtgatacatt ... tcttgatcagCTGAGTTTGAGTGAGATAAAAGAACTCTATGGCACACGGCATATTGGCAGA
EST: ATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAG CTGAGTTTGAGTGAGATAAAAGAACTCTATGGCACACGGCATATTGGCAGA
genomic: ATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAGgtgatacatt ... tcttgatcagCTGAGTTTGAGTGAGATAAAAGAACTCTATGGCACACGGCATATTGGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAGGGGGCTCTATTATGACAGATTAAAAGGTTGCCTTTTGAAGCTTGATTTTTTCGGGTCTATCGAACCAGATGGTTGCTTCTTTGGGCGGCATAAGgtgatacattcactcattcatattttttatgttcaaatgtaaataagtattttcttaatataatcttataattatgttagtgattggttgccttgtactg
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