1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGTGGGTTGACCATGCTTCAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTgtgagtatatttcacattttcatatcattttcatgtctgatgatacttgatttgcaattagtattgagggggtttccgtaaaacaagtattgatgggatt...
species | Oryza sativa |
transcript | LOC_Os09g15430.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCT GTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGEST: gi|89182960|gb|CI045718.1|CI045718
genomic: TCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTgtgagtatat ... atatctgcagGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAG
EST: TCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCT GTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGEST: gi|87029609|gb|CI257404.1|CI257404
genomic: TCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTgtgagtatat ... atatctgcagGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAG
EST: TCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCT GTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAG
genomic: TCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTgtgagtatat ... atatctgcagGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTGGGTTGACCATGCTTCAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTgtgagtatatttcacattttcatatcattttcatgtctgatgatacttgatttgcaattagtattgagggggtttccgtaaaacaagtattgatgggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG