1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaattaaggagttcctatctccacgtcatgggctactccttaactgttctgttattcttacaattgctcttttttttttcttacttcag
species | Oryza sativa |
transcript | LOC_Os08g44930.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG GTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCEST: gi|427716|gb|D23851.1|D23851
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG GTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCEST: gi|88976228|gb|CI024445.1|CI024445
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG GTTTTTGAGACCCAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCEST: gi|88484451|gb|CI421722.1|CI421722
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG GTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCEST: gi|3767637|gb|AU031664.1|AU031664
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: TGGATNCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG GTTTTTGAGACNAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaattaaggagttcctatctccacgtcatgggctactccttaactgttctgttattcttacaattgctcttttttttttcttacttcag
- - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG