1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAACTCAAAAGGTTTTAGAACCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattactatggagaagtaccataggtcaattattatttcctgctctttagtgctgatccatcatggaaaaagagcattctcagcactttttgggcc...
species | Oryza sativa |
transcript | LOC_Os08g44820.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|163928877|gb|EG711939.1|EG711939
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|86479189|gb|CI121822.1|CI121822
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|86482468|gb|CI125101.1|CI125101
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|87007317|gb|CI278988.1|CI278988
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|66913463|gb|CX100311.1|CX100311
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|163929507|gb|EG713462.1|EG713462
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|29661740|gb|CB658015.1|CB658015
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|58688079|gb|CK076766.1|CK076766
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|38468259|gb|CF952390.1|CF952390
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGTTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGGEST: gi|86908094|gb|CI298829.1|CI298829
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGEST: gi|29638321|gb|CB643330.1|CB643330
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAG
EST: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAG ATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
genomic: TGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattac ... tattccacagATTCCCAGACCAAGAGTAGTCTGATCGGGAAGCGTTTTGTAAAGATACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACTCAAAAGGTTTTAGAACCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTTACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGgtaatattactatggagaagtaccataggtcaattattatttcctgctctttagtgctgatccatcatggaaaaagagcattctcagcactttttgggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC