Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag

Basic information

species Oryza sativa
transcript LOC_Os08g44450.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag
    || |||||| |||| |||||||||||||||||||| || |||||||| |||||| |||||||||||||||| ||| |||| ||||||||||||||||||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||       ||   |     |  | | |  |||  || || ||  | |   ||     
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtgatcc--tctggtctttattgcatctat---gccttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc------gaaggagttggttctaacacgttgtgat-gtatgcatcttgcag-----

upper sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G144387_T03 (Zea mays), 5'ss of exon 5
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttat-ctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag
    || || |||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||| |||| ||||||||||||||||||||| |  ||   ||   |||   |    ||   |    ||   | | | ||||  | ||||    ||    || |||||      | | | | | | |      ||  | ||||      ||                                        
TGCCGTTGGCAACTTGGCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGATGAGCGTCAACTTCCTTGTTTCCCTTCTGAAGAAGAACTGGCAGAATgtgagtgacgctcgccttcaccttaataaccgcttctg---ttgt-gtttacatctaatgaacatttcagaatgtacatatgctgaaggacttggttataacatgctgtgctgtgtgctgtg-cag---------------------------------------

upper sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G170561_T01 (Zea mays), 5'ss of exon 6
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag
    || |||||| |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||| |||| || |||||||||||||||||| |||  |  ||  | |  ||||||  |      ||||    ||    |||||          |||  || || | |    ||  | |  || ||||   |||           ||  |  || | |||||  |   |  | | ||| |   ||     
CGTGGTTGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCGTCAACTTCCTCGTGTCTCTTCTGAAGAAAAACTGGCAGAATgtgagtgatccat--tggtctttattgcatctat---gccttaagaatcgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc---------gaaggagttggttataacacgttgtgatgtatgtgttgcag-----

upper sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G369991_T01 (Zea mays), 5'ss of exon 4
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag
    || |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||  || |||||||||||||||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||           ||  |  || | |||||  |      | | ||  |   ||     
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAAATGAGCGTCAACTTCCTCGTGTCTCTTCTGACGAAAAACTGGCAGAATgtgagtgatcc--tctggtctttattgcatctat---gccttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc---------gaaggagttggttataacacgttgcgatgtatgcgttgcag-----

upper sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgt-tatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag
     | |||||||     |||||||| ||||| |||   || ||||  |||||| | || ||||||||||||||||| ||||| ||||||||||||||||| |||  || |||||     || |||| ||||| |  | || |  |      | || |       ||  | | |||   | |||  ||| | | |  ||  |||      ||| | |   |||   |||   |   ||| ||  |                   
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctt-tctatttgaatgcagtatatctgaaggtgttcttgtgat-gcttgtattttcattat---taagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaattt---ttgtaacag-------------------

upper sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S18_121V6.1 (Physcomitrella patens), 5'ss of exon 3
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctg-agcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag
     | || || |     ||||||||||||||||||   |||||||  || ||| | ||||||||||| || |||||  |||| ||||||||||||||||| ||  |     ||   ||  |  |   ||    |   || |    ||   ||  || | |     || | | |   |||    |   || |||| | |     |  |   || |   |  |   ||| | |||  ||     |  |||||   |         
TGCCATTGGAAATTGTGACATGGAGGAGAAGCAGATCTTCCAAAACACTCAGATGGGTGTCAACTTCCTTGTATCCCTGCTGAAGAAGAACTGGCAGAATgtaagcaacaaactcaatagtttcatcatatt---tccgacctgttccttttattcgtattagtttgtattaattcggtatttactcgagc-ttgcgtcg----ctgatcacatctctaagtatt-ctgttcatacttt-----ttcttgtggcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88268120|gb|CI377857.1|CI377857
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAAT
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGT
EST: gi|33690336|gb|CF318575.1|CF318575
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88251408|gb|CI349836.1|CI349836
EST:     GAGCGTCAACTTCCTCCTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGCTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|33800481|gb|CF326110.1|CF326110
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88298079|gb|CI558484.1|CI558484
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88298079|gb|CI558484.1|CI558484
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88468547|gb|CI515029.1|CI515029
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGCATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88468547|gb|CI515029.1|CI515029
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGCATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88239937|gb|CI239099.1|CI239099
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|29637359|gb|CB642368.1|CB642368
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|33665358|gb|CF296325.1|CF296325
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33665358|gb|CF296325.1|CF296325
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|87024927|gb|CI261436.1|CI261436
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88480557|gb|CI417828.1|CI417828
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88480557|gb|CI417828.1|CI417828
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33666760|gb|CF297727.1|CF297727
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33666760|gb|CF297727.1|CF297727
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88217543|gb|CI217392.1|CI217392
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|86873715|gb|CI341148.1|CI341148
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|86873715|gb|CI341148.1|CI341148
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33664248|gb|CF295215.1|CF295215
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTTTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88432055|gb|CI562886.1|CI562886
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88432055|gb|CI562886.1|CI562886
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88253418|gb|CI352044.1|CI352044
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88253418|gb|CI352044.1|CI352044
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88297766|gb|CI553395.1|CI553395
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88297766|gb|CI553395.1|CI553395
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|7332384|gb|AU085730.1|AU085730
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|86512579|gb|CI155212.1|CI155212
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88273716|gb|CI394122.1|CI394122
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88273716|gb|CI394122.1|CI394122
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33672247|gb|CF300486.1|CF300486
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33672247|gb|CF300486.1|CF300486
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|218495789|gb|FG952983.1|FG952983
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACGGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|86866953|gb|CI343813.1|CI343813
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|86532320|gb|CI172526.1|CI172526
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|89195029|gb|CI051142.1|CI051142
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88271155|gb|CI387010.1|CI387010
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88271155|gb|CI387010.1|CI387010
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88215409|gb|CI215258.1|CI215258
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88215409|gb|CI215258.1|CI215258
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88691700|gb|CI733778.1|CI733778
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGCATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88691700|gb|CI733778.1|CI733778
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGCATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|86507716|gb|CI150349.1|CI150349
EST:     GAGCGTCAACTTCCTCGTGCCCCTTCTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88296837|gb|CI540189.1|CI540189
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88296837|gb|CI540189.1|CI540189
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88460975|gb|CI553111.1|CI553111
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88460975|gb|CI553111.1|CI553111
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|29687405|gb|CB683680.1|CB683680
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|29687405|gb|CB683680.1|CB683680
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|86835683|gb|CI348140.1|CI348140
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|86835683|gb|CI348140.1|CI348140
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33821233|gb|CF336425.1|CF336425
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|33821233|gb|CF336425.1|CF336425
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|29687000|gb|CB683275.1|CB683275
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88464411|gb|CI544872.1|CI544872
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88464411|gb|CI544872.1|CI544872
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|25807648|gb|CA763609.1|CA763609
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88438231|gb|CI538590.1|CI538590
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88438231|gb|CI538590.1|CI538590
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|86822948|gb|CI251956.1|CI251956
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAG
EST: gi|88384378|gb|CI551304.1|CI551304
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88384378|gb|CI551304.1|CI551304
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88974536|gb|CI022077.1|CI022077
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88428805|gb|CI554521.1|CI554521
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88428805|gb|CI554521.1|CI554521
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|86601353|gb|CI251727.1|CI251727
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCTATAAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88966602|gb|CI353153.1|CI353153
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88966602|gb|CI353153.1|CI353153
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88439395|gb|CI536367.1|CI536367
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88439395|gb|CI536367.1|CI536367
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|27577252|gb|CA999946.1|CA999946
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|86416466|gb|CI030477.1|CI030477
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         GGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgagG-TGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAG
EST: gi|88269482|gb|CI380780.1|CI380780
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-
EST: gi|88269482|gb|CI380780.1|CI380780
EST:     GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGA                         G
genomic: GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgtt ... gataggtgag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC