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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCCATTCTGCCGAAAGgttagtatttttagccttcgacatctgcatcttgcactttaccttctgtcatgtatgaacaatttttttaaaatttgcag

Basic information

species Oryza sativa
transcript LOC_Os08g44400.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58590549|gb|CF988857.1|CF988857
EST:     TGAAGGCTGCCCATTCTGCCGAAAG                         GTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
genomic: TGAAGGCTGCCCATTCTGCCGAAAGgttagtattt ... aaatttgcagGTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
EST: gi|29687876|gb|CB684151.1|CB684151
EST:     TGAAGGCTGCCCATTCTGCCGAAAG                         GTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
genomic: TGAAGGCTGCCCATTCTGCCGAAAGgttagtattt ... aaatttgcagGTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
EST: gi|58593409|gb|CF991717.1|CF991717
EST:     TGAAGGCTGCCCATTCTGCCGAAAG                         GTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
genomic: TGAAGGCTGCCCATTCTGCCGAAAGgttagtattt ... aaatttgcagGTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
EST: gi|27548923|gb|CA767585.2|CA767585
EST:     TGAAGGCTGCCCATTCTGCCGAAAG                         GTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC
genomic: TGAAGGCTGCCCATTCTGCCGAAAGgttagtattt ... aaatttgcagGTCAGAGAGATGGTGGCCGTCTTGGACCTTGATGTTTTGTTTTACCCCTGC