1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGTGAAGAAGCTTGCCAAGAAGTACCATGCTTTCTTAGCATCAGAGGCCATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttccattttctgacatgcttgctcttcttttcatgatctttgttttgaatacctgttttttcatgtacttgtatgcacatttcaattttttgg...
species | Oryza sativa |
transcript | LOC_Os08g44380.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33665236|gb|CF296203.1|CF296203
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCEST: gi|33823164|gb|CF337382.1|CF337382
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACC
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33694097|gb|CF322336.1|CF322336
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86527437|gb|CI167643.1|CI167643
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33655136|gb|CF277750.1|CF277750
genomic: CGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|55439434|gb|CV733025.1|CV733025
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACAEST: gi|55433273|gb|CV729688.1|CV729688
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|55433210|gb|CV729649.1|CV729649
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATTAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTEST: gi|89168705|gb|CI038557.1|CI038557
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTT
EST: CCCGTCTCCTTGGTCCTGGTCTATACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86525434|gb|CI165640.1|CI165640
genomic: CCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: AATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|88977440|gb|CI025176.1|CI025176
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGATATCCAAGGTCEST: gi|33655758|gb|CF278372.1|CF278372
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGA-ATCCAAGGTC
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33671594|gb|CF299833.1|CF299833
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33822843|gb|CF337227.1|CF337227
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86252708|gb|CI010190.1|CI010190
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|55828000|gb|AU065281.2|AU065281
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33659833|gb|CF282446.1|CF282446
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|24208887|gb|AU225914.1|AU225914
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCATATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33657180|gb|CF279794.1|CF279794
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|10931177|gb|AU161451.1|AU161451
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33689536|gb|CF317775.1|CF317775
genomic: CAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58675234|gb|CK063921.1|CK063921
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|87042110|gb|CI194734.1|CI194734
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|89179996|gb|CI044275.1|CI044275
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33694098|gb|CF322337.1|CF322337
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86539769|gb|CI179975.1|CI179975
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|2442273|gb|C74044.1|C74044
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: ATCATCAAGCAGATCCCCCGTNTTCCTTGGTCCTGGTNTTAACAAGGCAG GCAAGTTCCCTAEST: gi|218489369|gb|FG950492.1|FG950492
genomic: ATCATCAAGCAGATCCCCCGTCT-CCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTA
EST: CATCATCAAGCAAATCCCCCGTCTCCTGGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|88984771|gb|CI009539.1|CI009539
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33655135|gb|CF277749.1|CF277749
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33662471|gb|CF293438.1|CF293438
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86903318|gb|CI313681.1|CI313681
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: ATCATCAAGCAGATCCCCCGTCTCCTTGGTGCTGGTCCAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|55437784|gb|CV732184.1|CV732184
genomic: ATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACEST: gi|33664770|gb|CF295737.1|CF295737
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTAC
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|218488573|gb|FG946164.1|FG946164
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTAEST: gi|33689687|gb|CF317926.1|CF317926
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|38478543|gb|CF962676.1|CF962676
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|88906172|gb|CI375244.1|CI375244
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CCGTCTCCTTGGTCCTGGTCTAAAC-AGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTGAAGAAGCTTGCCAAGAAGTACCATGCTTTCTTAGCATCAGAGGCCATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttccattttctgacatgcttgctcttcttttcatgatctttgttttgaatacctgttttttcatgtacttgtatgcacatttcaattttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT