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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacactcactgttctccttttactagcttgaacttactacataatctgtttgtgttttcctccaacctgtatactgttctcgagttgttcatgtttccatttgatttcaaaacag

Basic information

species Oryza sativa
transcript LOC_Os08g43400.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g43400.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G07950.1 (Glycine max), 5'ss of exon 4
ATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacactcactgttctccttttactagcttgaacttactacataatctgtttgtgttttcctccaacctgtatactgttctcgagttgttcatgtttccatttgatttcaaaacag
|||||| ||||  ||||||||||| ||||| || |||||| |||| ||||||||||| || |  |||   || || ||||||||||| |||||||| ||||||  |    |  ||   || |||     |    ||  | |||  | |  ||    |||  |  ||  |  | |                                          
ATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTCTCGATGATCCAGAGgtatgcatcttcatcattttctacagaactagtatttgtgcat--tttacttacagtttgtt--aattta-acag-----------------------------------------

upper sequence: LOC_Os08g43400.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 4
ATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacac----tcactgttctccttttactagcttgaacttactacataatctgtttgtgttttcctccaacctgtatactgttctcgagttgttcatgtttccatttgatttcaaaacag
|||  ||||||  ||||| ||| | ||||| || |||||| |||| ||||||||||| ||    ||||  ||||| |||||||||||||||||||| |||||| |     | |    | |  ||  |  |||| |  ||| ||||||  | |  ||     ||  | |||  |  | |                                          
ATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGgtaaatatctttatcagtgtttttcaaaaagctggtgctt-ctacat--tttacttaacagtt--tgcaatttaaacag-----------------------------------------

upper sequence: LOC_Os08g43400.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 4
ATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacac-tcactgttctcctttta-ctagcttgaacttactacataatctgtttgtgttttcctccaacctgtatactgttctcgagttgttcatgtttccatttgatttcaaaacag
|||||| ||||  ||||||||||| ||||| || |||||| |||| ||||||||||| || |  |||   || || |||||||||||||||||||| |||||| || |||   || ||     | ||||  |      | |  |    | ||||||   ||   |                                                     
ATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTCAGGGACCTCCTTAGTCCAGACTGTACTCCTCTCAGACTTCTTGATGATCCAGAGgtatacgtcatcattttctacagaactagtatttgtgcattttacttacagtttgttaatttaacag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88367346|gb|CI566312.1|CI566312
EST:     ACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAG                         AAAGGAACTACCGTAGAGAAACTCACTGAGGAAACCTTGAGGGACAAGGAT
genomic: ACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacactcac ... ttcaaaacagAAAGGAACTACCGTAGAGAAACTCACTGAGGAAACCTTGAGGGACAAGGAT