1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATATGATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGgtacatttttcacaattcttttctttctcttgcatcagcctgtgctttctaaactgtttaggaaagacctgcatgcattgaaaatggcttatcctgacat...
species | Oryza sativa |
transcript | LOC_Os08g43380.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAG GAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTAEST: gi|58662077|gb|CK050757.1|CK050757
genomic: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGgtacattttt ... tctggtgcagGAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTA
EST: TTTGAATNAGTACTGAAGCAGCAAAGGAATGTCATACAAACAAATAAAAG GAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTAEST: gi|29616220|gb|CB621232.1|CB621232
genomic: TTTGAAT-AGTACTGAAGCAG-AAAGGAATGTCATACAAACAAATAAAAGgtacattttt ... tctggtgcagGAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTA
EST: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAG GAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTAEST: gi|58652967|gb|CK041647.1|CK041647
genomic: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGgtacattttt ... tctggtgcagGAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTA
EST: GA-TTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAG GAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTAEST: gi|58653468|gb|CK042148.1|CK042148
genomic: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGgtacattttt ... tctggtgcagGAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTA
EST: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAG GAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTA
genomic: GATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGgtacattttt ... tctggtgcagGAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGgtacatttttcacaattcttttctttctcttgcatcagcctgtgctttctaaactgtttaggaaagacctgcatgcattgaaaatggcttatcctgacat
- - - - - - - - CTGAAG
- - - - - - - - - TGAAGC
- - - - - - - - - - - - - AAGGAA