Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag

Basic information

species Oryza sativa
transcript LOC_Os08g41810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G148744_T02 (Zea mays), 5'ss of exon 4
ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag
 ||||  ||||| ||||| || |||||||||||| | ||||| |  |||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||  ||| || ||  | ||  | | ||| |  |||     ||  ||| || | |||   |   |||   ||         | ||||   |  ||
GCAAGCTAAGTCGCGCCACTCCAATGGGCAGGGCCGCTGGCCCGTTAAATCAGCCAGGTTCATCCTGGATTTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgc-cctctttctcatctt--tttaaatgtgcatg-----acatttcctactgtttggtttgacttacact---------tctgttatttccag

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 4
ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag
|||||  ||||||||||| || |||||||||||  | |||||||  || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||  ||| |||    | ||||| |  |||||||  ||| |||||  ||| |  |  |     | |||   ||||  ||| | ||||   |  ||
ACAAGCAAAGTCTCGCCACTCCAATGGGCAGGGTCGCTGGCCTGTTAAGTCAGCCAGGTTCATATTGGATTTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgc-cctcttgtc--tcttccttttcattttaagcgtg-cactca-catttcctactgtctggtttgacttaac--atg-tctgttatttccag

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag
 || |  |||    | || || |||||||| ||  | ||||| | ||||||||| | ||||||| | ||| |||||||||||||||||||||| ||||| |||||  |||||       |||  | | | |||| ||      | | |   |    ||| ||  |  ||   ||   |  |  |   ||||  | ||
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgt-cctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatactt-ttggttttgctttgc-cacag

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 3
ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag
 || |  |||    | || || ||||| || ||  | ||||||| |||||| || |  |||||  | ||| |||| ||||||||||||||||| ||||||||||| |     |     ||  ||    | | |      || |  |  |   |  |   |||||    |    |  || |  |              
TCAGGCAAAGAACAGGCATTCGAATGGACAAGGACGCTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattcaattgcccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtcaatt--cttacag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88288852|gb|CI517983.1|CI517983
EST:     AGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88483888|gb|CI421159.1|CI421159
EST:     GAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88569588|gb|CI660763.1|CI660763
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAA
EST: gi|88486185|gb|CI423456.1|CI423456
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88329008|gb|CI658658.1|CI658658
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCA
EST: gi|88237554|gb|CI237403.1|CI237403
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88279621|gb|CI400621.1|CI400621
EST:     TGCTGAGAGTGACGCTGAT                         G
genomic: TGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatag-
EST: gi|88279621|gb|CI400621.1|CI400621
EST:     TGCTGAGAGTGACGCTGAT                         G
genomic: TGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatag-
EST: gi|88972978|gb|CI019597.1|CI019597
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|3761527|gb|C98775.1|C98775
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88505088|gb|CI432594.1|CI432594
EST:     GAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88339235|gb|CI633806.1|CI633806
EST:     CAGCCAGGTTCATTTGGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCT
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCT
EST: gi|88547664|gb|CI477976.1|CI477976
EST:     TGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: TGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|38478888|gb|CF963021.1|CF963021
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88742236|gb|CI765744.1|CI765744
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATG
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATG
EST: gi|88480986|gb|CI418257.1|CI418257
EST:     GTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88569569|gb|CI660744.1|CI660744
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTT
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTT
EST: gi|88281357|gb|CI402753.1|CI402753
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|86873025|gb|CI327022.1|CI327022
EST:     AGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|33670175|gb|CF298414.1|CF298414
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88349920|gb|CI634455.1|CI634455
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88314950|gb|CI610009.1|CI610009
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88437723|gb|CI533680.1|CI533680
EST:     CAGGCAGGTTCATTTTGGATCTGCTGAAGGATNCTGAGGGTAACGCTGAT                         GTTAAAGGGTTGGATGTCGACAACCTCTTCGTTTCACACATGCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88346135|gb|CI634008.1|CI634008
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGAT
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGAT
EST: gi|88335987|gb|CI645588.1|CI645588
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGA
EST: gi|88237760|gb|CI237609.1|CI237609
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88348584|gb|CI634179.1|CI634179
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGGTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGA
EST: gi|88906347|gb|CI375419.1|CI375419
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|38565668|gb|CK085121.1|CK085121
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|3767152|gb|AU031262.1|AU031262
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88576077|gb|CI670222.1|CI670222
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCC
EST: gi|88515252|gb|CI442906.1|CI442906
EST:     TGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: TGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|86836934|gb|CI347501.1|CI347501
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88558425|gb|CI488909.1|CI488909
EST:     TGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCCAGGTGAA
genomic: TGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACAT-CCAGGTGAA
EST: gi|88486495|gb|CI423766.1|CI423766
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88490224|gb|CI427496.1|CI427496
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88517129|gb|CI444611.1|CI444611
EST:     TCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: TCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88290637|gb|CI667010.1|CI667010
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCG
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCG
EST: gi|88489112|gb|CI426384.1|CI426384
EST:     CTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88998114|gb|CI037999.1|CI037999
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88906020|gb|CI089606.1|CI089606
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTCTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|44673470|gb|CR286904.1|CR286904
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGTCAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88308770|gb|CI653657.1|CI653657
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAA
EST: gi|88470304|gb|CI407575.1|CI407575
EST:     AGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|86425044|gb|CI070141.1|CI070141
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88522050|gb|CI449783.1|CI449783
EST:     GAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88517291|gb|CI444945.1|CI444945
EST:     CAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88506548|gb|CI434054.1|CI434054
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|27548383|gb|CA766455.2|CA766455
EST:     CTGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88362003|gb|CI607003.1|CI607003
EST:     AGCCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AGCC-AGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88368933|gb|CI636710.1|CI636710
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGA
EST: gi|88309084|gb|CI654703.1|CI654703
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTC
EST: gi|426713|gb|D22783.1|D22783
EST:     GCCAGGTTCATTTTGGGATCTGCTGAAGGAATGCTGAGAGTAACGCTGAT                         GTTAAAAGGCTTTGGATGTCGACAACCTCTT
genomic: GCCAGGTTCATTTTGG-ATCTGCTGAAG-AATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAA-GGCTT-GGATGTCGACAACCTCTT
EST: gi|88440338|gb|CI549219.1|CI549219
EST:     GATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88337583|gb|CI630880.1|CI630880
EST:     CACCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGCTTT-ACACATCCAGGTGA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCG-TTTCACACATCCAGGTGA
EST: gi|88327780|gb|CI657824.1|CI657824
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTC
EST: gi|86413432|gb|CI067837.1|CI067837
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88837859|gb|CI371437.1|CI371437
EST:     AGGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: A-GCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88519649|gb|CI447303.1|CI447303
EST:     TTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: TTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88508928|gb|CI436434.1|CI436434
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|86414312|gb|CI068715.1|CI068715
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGTTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|55410152|gb|CV722528.1|CV722528
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88342189|gb|CI658844.1|CI658844
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTC
EST: gi|88296258|gb|CI667648.1|CI667648
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCT
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCT
EST: gi|88506832|gb|CI434338.1|CI434338
EST:     CATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88508906|gb|CI436412.1|CI436412
EST:     CAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88283395|gb|CI404841.1|CI404841
EST:     AGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88392867|gb|CI624098.1|CI624098
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88556916|gb|CI487280.1|CI487280
EST:     CTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88742322|gb|CI765830.1|CI765830
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTC
EST: gi|88322363|gb|CI540331.1|CI540331
EST:     GGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCNTTTCACACATCCAGGTGAAC
genomic: GGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|11173119|gb|AU164622.1|AU164622
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88575603|gb|CI669748.1|CI669748
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|15852189|gb|BI804985.1|BI804985
EST:     CAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88554208|gb|CI484374.1|CI484374
EST:     TCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGNTGAAC
genomic: TCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88520620|gb|CI448274.1|CI448274
EST:     GGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|29687038|gb|CB683313.1|CB683313
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|58604680|gb|CK015208.1|CK015208
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88306868|gb|CI672036.1|CI672036
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACAT
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACAT
EST: gi|88349906|gb|CI634441.1|CI634441
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGG
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGG
EST: gi|88520147|gb|CI447801.1|CI447801
EST:     CATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|427670|gb|D23804.1|D23804
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGANTGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88440435|gb|CI549316.1|CI549316
EST:     GAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: GAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88851310|gb|CI404362.1|CI404362
EST:     TGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: TGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88332741|gb|CI660259.1|CI660259
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTT
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTT
EST: gi|33670174|gb|CF298413.1|CF298413
EST:     CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGAT                         GTTAAAGGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAA
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGG-CTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAA
EST: gi|55828013|gb|AU065528.2|AU065528
EST:     CAGCCAGGTTCATTTTNGATCTGCTGAAGAATNCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGG
genomic: CAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGG
EST: gi|88516539|gb|CI444193.1|CI444193
EST:     AATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88510798|gb|CI438304.1|CI438304
EST:     ATGCTGAGAGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: ATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
EST: gi|88380692|gb|CI521261.1|CI521261
EST:     AGTAACGCTGAT                         GTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC
genomic: AGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 47 (downstream exon)
Score: 117

ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacct ... ttgcgtatagGTTAAAGGCTTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAACCAAGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCATGGACGCATCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT