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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAAGTGTTGCAGCCAGTCTATTGGGGGTCTGTGTCCCAGGATCAGGTGCTAGAATTATGGCATTCATAGGGGGTCCATCTACAGAGGGGCCTGGTTCTgtaagtcaaaattctctaataaattatcatcttgtcatgtttaaggacacaccaatggcctactgttggaactgaggttattcattcatacccacctggt...

Basic information

species Oryza sativa
transcript LOC_Os08g36994.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58657486|gb|CK046166.1|CK046166
EST:     GGCATTCATAGGGGGTCCATCTACAGAGGGGCCTGGTTCT                         ATCGTATCCAAGTCCTTGGTCAGAACCAATTCGTTCACATAAAGACCTTGA
genomic: GGCATTCATAGGGGGTCCATCTACAGAGGGGCCTGGTTCTgtaagtcaaa ... aaaatttcagATCGTATCCAAGTCCTT-GTCAGAACCAATTCGTTCACATAAAGACCTTGA
EST: gi|396941631|gb|HO188288.1|HO188288
EST:     ATTATGGCATTCATAGGGGGTCCATCTACAGAGGGGCCTGGTTCT                         ATCGTATCCAAGTCCTTGTCAGAACCAATTCGTTCACATAAAGACCTTGAT
genomic: ATTATGGCATTCATAGGGGGTCCATCTACAGAGGGGCCTGGTTCTgtaagtcaaa ... aaaatttcagATCGTATCCAAGTCCTTGTCAGAACCAATTCGTTCACATAAAGACCTTGAT