1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGGACGATTCCTGCGGCGAGATCCCAGTGGCGTTCGTCGTCGCACGCGACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatcatgatcgatcaagaatattggttctgcaaactaattattaaccttagcatcgaggtgaactgaacgctgggtttatctctgaataatcag
species | Oryza sativa |
transcript | LOC_Os08g34790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|88264952|gb|CI368726.1|CI368726
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCACTACGTCCCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|86498102|gb|CI140735.1|CI140735
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|87033821|gb|CI188445.1|CI188445
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|86525140|gb|CI165346.1|CI165346
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|86542814|gb|CI183020.1|CI183020
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|88479904|gb|CI417175.1|CI417175
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|86502493|gb|CI145126.1|CI145126
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACCAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCEST: gi|18387840|gb|BM421038.1|BM421038
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTAC-AAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCC
EST: ACGGCTCGGGGATCACCGAGGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|88332567|gb|CI651727.1|CI651727
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|87006987|gb|CI275295.1|CI275295
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGEST: gi|88202817|gb|CI200669.1|CI200669
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
EST: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAG GTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
genomic: ACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatc ... gaataatcagGTGGTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGACGATTCCTGCGGCGAGATCCCAGTGGCGTTCGTCGTCGCACGCGACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGgtgagagatcatgatcgatcaagaatattggttctgcaaactaattattaaccttagcatcgaggtgaactgaacgctgggtttatctctgaataatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG