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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCGCGCTGCCGAGGCTGCAGACGCTCGACCTCTCCAACAACCGCTTCTCCGGCCGCGTCCCCGACACGCTCGGCCGCCTCTCCACCCTCCGATACCTgtcagtcacttctctccccccaacacattccattccattccatactttactactctacactaaagctaaaatagtttaagttcttcatggttgtctcacttgcgtgttaatcttgccgcag

Basic information

species Oryza sativa
transcript LOC_Os08g34380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g34380.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G151955_T01 (Zea mays), 5'ss of exon 4
TGGGCGCGCTGCCGAGGCTGCAGACGCTCGACCTCTCCAACAACCGCTTCTCCGGCCGCGTCCCCGACACGCTCGGCCGCCTCTCCACCCTCCGATACCTgtcagtcacttc---------tctccccccaacacattc--cattccattccatactttactactctacactaaagctaaaatagtt--taagttcttcatggt------tgtctcacttgcgtgttaatcttgccgcag
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TGGGCGCGCTGCCGAGGCTGCAGACGCTGGACCTCTCCAACAACCGCTTCTCCGGCCGCGTGCCCAACACGCTGGGCCGCATCACCACCCTCCGATACCTgtgagtagtcttgtcttgttgtctcagccttgaggattcagcaaaccgcctcccataatccca-tctccattccagttacaggcgcgagtatatatctcatgctgctctccgtcctgtctgcgtgt-gctcttgctgcag