1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGCCTACAGTTTGGGTGATACTTTCACTTCTTCCGATTGTTGGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTGgtatgtaacaagtactatcatttgaatccaagcttaataaaatgaactgtaaaggagcaattatgccaaacattttgggcttatgtgtttctctgctatt...
species | Oryza sativa |
transcript | LOC_Os08g25624.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTGTTGGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTG GGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAEST: gi|58610772|gb|CK038484.1|CK038484
genomic: ATTGTTGGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTGgtatgtaaca ... gatacaacagGGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAA
EST: ATTGTTGGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTG GGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAAEST: gi|58688340|gb|CK077027.1|CK077027
genomic: ATTGTTGGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTGgtatgtaaca ... gatacaacagGGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAA
EST: GGTGGTGTAGCA-TGGCATCTCTTACTGAGGCTTCCTTCAACTG GGCTGGG-TTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAA
genomic: GGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTGgtatgtaaca ... gatacaacagGGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCCTACAGTTTGGGTGATACTTTCACTTCTTCCGATTGTTGGTGGTGTAGCATTGGCATCTCTTACTGAGGCTTCCTTCAACTGgtatgtaacaagtactatcatttgaatccaagcttaataaaatgaactgtaaaggagcaattatgccaaacattttgggcttatgtgtttctctgctatt
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa