Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtattatatttctatttttcttgttttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag

Basic information

species Oryza sativa
transcript LOC_Os08g23810.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G125052_T01 (Zea mays), 5'ss of exon 2
GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtattatatttctatttttcttgttttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag
||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| |||||| || || |       ||||      ||| ||     || | | |   |||| |   | | |||||  || |||||||||
GCACTTAACATATTTGAGACAAGTCTGAGGCGTGGAAAGTTTGATGAATCACGGAAgtctgtattttaatttt-------ttgt------tagattcatcatgcagacag--tttagcaggtgtgtaacttactgttgatacag

upper sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G070422_T02 (Zea mays), 5'ss of exon 4
GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtattatatttctatttttcttgttttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag
||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| |||||| || ||||            |||| | | ||     |  | | |   |||| |   | |||||||  || |||||||||
GCACTTAACATATTTGAGACAAGTCTGAGGCGTGGAAAGTTTGATGAATCACGGAAgtctgtattttagttct------------ttat-tgggttcatcatacagacag--tttagcaggtgtctaacttactgttgatacag

upper sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 4
GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtattatatttctatttttcttgttttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag
|| || || || |||||| | |||||| |||||||||||||||| ||||||||   || ||   |  | | || ||   ||  |||| | | | |   || ||  | |   |||   ||  ||   |||||| | ||       
GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgttaaatactgtt--actgattttgttt-gttagactatgtga-tgctatt--gctaataagaaactatattttccag---

upper sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 4
GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttg-tattatatttctatttttcttgt-tttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag
||| | ||||| ||||| || |||||| ||||||| |||||||||||||||||   ||  | | ||| | ||   ||| | |    ||||  | |   |   |  ||| |    | |   ||| ||  || | | |  || |  ||
GCATTGAACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctct---tctgatggaa-tgtttaatgttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58686263|gb|CK074950.1|CK074950
EST:     AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAA                         GCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
EST: gi|58679709|gb|CK068396.1|CK068396
EST:     AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAA                         GCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
EST: gi|29613728|gb|CB618741.1|CB618741
EST:     AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAA                         GCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
EST: gi|58659884|gb|CK048564.1|CK048564
EST:     ACATATTTGAGACAAGCCTAAAGGCGTGGAAAGTTTGATGAATCACGAAA                         GCTGGCTGATGGATCTCTTATGG
genomic: ACATATTTGAGACAAGCCTAA-GGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGG
EST: gi|571922|gb|D41433.1|D41433
EST:     AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGGAA                         GCTGCCTNATGGATCTCTTATGGGAATTGTTAAAG
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAG
EST: gi|571926|gb|D41437.1|D41437
EST:     AACATATTTGAGACAAGNCTAAGGCGTGGAAAGTTTGATGAATCACGNAA                         GCTGCCTNATGGATCTCTTATGGAAATTGTTAAAGGCTATCCACTTGATGC
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
EST: gi|58656775|gb|CK045455.1|CK045455
EST:     AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAA                         GCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
EST: gi|33691058|gb|CF319297.1|CF319297
EST:     AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAA                         GCTGCCTGATGGACCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC
genomic: AACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtatta ... cttgatacagGCTGCCTGATGGATCTCTTATGGAAATTGTTAAAGTCTATCCACTTGATGC