1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatgatgagagtgagacaattcacatgcttagcttccttatgactaatatactccctccgtttcacaatataagactttctatcattgactata...
species | Oryza sativa |
transcript | LOC_Os08g19650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|29685658|gb|CB681933.1|CB681933
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|29639210|gb|CB644219.1|CB644219
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|58687578|gb|CK076265.1|CK076265
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|38469479|gb|CF953610.1|CF953610
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|58589921|gb|CF988229.1|CF988229
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATTCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACEST: gi|113930980|gb|DQ884077.1|DQ884077
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAAC
EST: GCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|58591360|gb|CF989668.1|CF989668
genomic: GCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGEST: gi|38473261|gb|CF957393.1|CF957393
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
EST: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACA GAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
genomic: CTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatg ... cgtcatgtagGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAgtaagtgatgatgagagtgagacaattcacatgcttagcttccttatgactaatatactccctccgtttcacaatataagactttctatcattgactata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccg