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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGgtgagatgtttcccccctttaccatttactgcgtccatgtttaatggagttactcgaatgtgctcagttagtattagttaagaactgcacaccagatctg...

Basic information

species Oryza sativa
transcript LOC_Os08g14460.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 4
GTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGgtgag-atgtttcccccctttaccatttactgcgtccatgtttaatggagttactcgaatgtgctcagttagtattagttaagaactgcacaccagatctg-------
|| |||||||| ||||| || |||||||||||||| || || |||||||| ||| | || ||||||||| |||||||||| ||||| | ||| |||||||| |     || |  || || | ||||  ||  | ||      |||   |||  |    ||| ||| ||  | |||  |  ||| |   |||| ||||||       
GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgccatttcttccctttctatttcatgt-tgcaatcccgatgttcttagcca---gtg-tcaatt--tgttaactgtgaatt-ttcacctgatctggaaggta