Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacag

Basic information

species Oryza sativa
transcript LOC_Os08g13690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 4
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactct-tgcgtacgctggtgtattaactttgtgcttaattgtttgatt-ctacag
||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |  ||| |  ||    | || ||| || ||| |     || |  | |   || |  |||   | |     | |   |||| ||  |  ||
TATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAATgtatgtttttacaattgcattgctgctattagaattttgtttgattgtttgtaaaactgaacatttgtttattttag

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacag
||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||   ||  |   |||||   |     |||| | | ||   || | || | | ||  | |   ||  |  ||| ||| | |||
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgccaatta-cgttcttgctat----tgaattatggc---cgattgtttgtgaaactggacatt--taatttaatttttcag

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G094051_T06 (Zea mays), 5'ss of exon 4
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgt-attaactttgtgcttaattgtttgatt-ctacag
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| |   |    | || ||| || ||| |     ||    ||   | || | |||   | |     | |   |||| ||  |  ||
TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGgtgtgttcactgatgtctgtttttacaattgcattgctgctattataattttgtctgattgtttgtaaaactgaacatttgtttattttag

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 4
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttg--gtttatgaaccagttttcttagaaatgcgtgaactcttgcgtac---gctggtgt-attaactttgtgcttaattgtt-tgattctacag-----
||||||||||||| | ||||| || ||||||||  ||||||||||||| ||||| |||||    | |||  ||  |      | |||  |   |      |  | ||      || ||| | |    |||  ||||||   |   | |    |      
TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaactgcttacaaatta-caaaatgagattttttttgttggtcacttattgaattgctgttactggtattgatcttaatcaatgctagtaagtaacttga

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 4
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgt---gcttaattgtttgattctacag--------
 |||||||| |||||||| |||||||||||||| ||||||||||| || ||||| |||||     |    ||   ||||  |         |    | ||  |  |  |  | || ||| | |     |   ||      | |||| | |        
GATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAGgtaaagattgatacttttttttgtgttttctttttggtttttttgctcttttctttaataattataactggacaaaaaaaaagtttctgctgatggtttt

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ23123 (Selaginella moellendorffii), 5'ss of exon 3
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat-gaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacag
|||||| | |||||| ||||||||| ||||||||||||||||||| ||  || | |||||   ||  | |    ||||    | |  || || |  ||||| |   | |     | ||   ||| |                      
TATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAGgtaaattccttgtgaaagttgcgattgtgatacgagttctcttactatcacat---tctttcttttatag--------------------

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ20182 (Selaginella moellendorffii), 5'ss of exon 3
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat-gaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacag
|||||| | |||||| ||||||||| ||||||||||||||||||| ||  || | |||||   ||  | |    || |    | |  |  || |  ||||  |   | |  || | ||   ||| |                      
TATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAGgtaaattccttgtgaaagctgcgattgtgaaacgagttctctgactatcac--gt-tctttcttttatag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487946|gb|FG943621.1|FG943621
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|86524249|gb|CI164455.1|CI164455
EST:     ACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATGAACATGCTG
genomic: ACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88729241|gb|CI752751.1|CI752751
EST:     CCATGCACCCCAAGAACAGGAACATCTTGCAGCTCCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCCCCCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33662258|gb|CF293225.1|CF293225
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218500250|gb|FG946063.1|FG946063
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33656769|gb|CF279383.1|CF279383
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88762137|gb|CI771693.1|CI771693
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCACCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAA
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAA
EST: gi|11172840|gb|AU164483.1|AU164483
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33686974|gb|CF315213.1|CF315213
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218500236|gb|FG945125.1|FG945125
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88344209|gb|CI655603.1|CI655603
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCT
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCT
EST: gi|29617930|gb|CB622942.1|CB622942
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|569496|gb|D40345.1|D40345
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|86525770|gb|CI165976.1|CI165976
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|11026050|gb|AU162651.1|AU162651
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33380976|gb|CF196319.1|CF196319
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33688839|gb|CF317078.1|CF317078
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|87018730|gb|CI254438.1|CI254438
EST:     GCTTCTGCGGTTGAGGCAG                         ATCTTCAACGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: GCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33683489|gb|CF311728.1|CF311728
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|38476312|gb|CF960445.1|CF960445
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58681140|gb|CK069827.1|CK069827
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58588495|gb|CF986803.1|CF986803
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|86499359|gb|CI141992.1|CI141992
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|86422414|gb|CI059987.1|CI059987
EST:     ACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: ACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88363002|gb|CI616159.1|CI616159
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGT
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGT
EST: gi|58653326|gb|CK042006.1|CK042006
EST:     CCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33694126|gb|CF322365.1|CF322365
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88421570|gb|CI618694.1|CI618694
EST:     CATGCACCCCAAGACCAGGAAGATCTTGCAGCCTTCTGGGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCACCCAT
genomic: CATGCACCCCAAGACCAGGAAGATCTTGCAGC-TTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCAT
EST: gi|218479663|gb|FG949104.1|FG949104
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33805769|gb|CF328764.1|CF328764
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58683169|gb|CK071856.1|CK071856
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88377207|gb|CI600362.1|CI600362
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|4714890|gb|AU056007.1|AU056007
EST:     CCCCAAGACCAGGANGATCTTCCAGCTTCTCCGNTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACAT-NTG
genomic: CCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|3766846|gb|AU030956.1|AU030956
EST:     CCATGCACCCCAAGNCCAGGAAGATC-TNCAGCTTCTGCGGTTGAGGCA-                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACAT-NTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|87026596|gb|CI252550.1|CI252550
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88421996|gb|CI611616.1|CI611616
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTC
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTC
EST: gi|33655322|gb|CF277936.1|CF277936
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|55411936|gb|CV724312.1|CV724312
EST:     AGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: AGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58604687|gb|CK015215.1|CK015215
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58667845|gb|CK056531.1|CK056531
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTC
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTC
EST: gi|88333856|gb|CI645270.1|CI645270
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAG
EST: gi|10931154|gb|AU161428.1|AU161428
EST:     CATGCACCCCAAGNCCAGGAAG-TCTTGCAAGCTTCTGCGGTTNAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTACCAAGGCAACCATTAACATGCTG
genomic: CATGCACCCCAAGACCAGGAAGATCTTGC-AGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33800764|gb|CF326253.1|CF326253
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|5701687|gb|AU062820.2|AU062820
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCT
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCT
EST: gi|87035018|gb|CI189642.1|CI189642
EST:     TGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: TGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218495485|gb|FG958236.1|FG958236
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAAACATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88360470|gb|CI608396.1|CI608396
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218483201|gb|FG946355.1|FG946355
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58588918|gb|CF987226.1|CF987226
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218478223|gb|FG961149.1|FG961149
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88314353|gb|CI604837.1|CI604837
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88338182|gb|CI677180.1|CI677180
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGC
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGC
EST: gi|58598392|gb|CK008920.1|CK008920
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218501770|gb|FG965921.1|FG965921
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|86602086|gb|CI260556.1|CI260556
EST:     CGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|87023963|gb|CI254527.1|CI254527
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|117234791|gb|CT847888.1|CT847888
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|86524297|gb|CI164503.1|CI164503
EST:     TGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: TGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218479242|gb|FG969145.1|FG969145
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|14191961|gb|AU184172.1|AU184172
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58586741|gb|CF985049.1|CF985049
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33661533|gb|CF292500.1|CF292500
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|87018504|gb|CI252258.1|CI252258
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|11565270|gb|AU165906.1|AU165906
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|55828230|gb|AU068954.2|AU068954
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATT
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATT
EST: gi|33809510|gb|CF330637.1|CF330637
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88736894|gb|CI760402.1|CI760402
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGG
EST: gi|88241267|gb|CI241116.1|CI241116
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCCTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|38477557|gb|CF961690.1|CF961690
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGG
EST: gi|33659711|gb|CF282324.1|CF282324
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58677343|gb|CK066030.1|CK066030
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|88395369|gb|CI611286.1|CI611286
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33822772|gb|CF337190.1|CF337190
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218502935|gb|FG945475.1|FG945475
EST:     CCATGCACCCCAAGACCANNAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAATGCAACCAT
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCAT
EST: gi|33692256|gb|CF320495.1|CF320495
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|58695727|gb|CK084414.1|CK084414
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|41881947|gb|BX927671.1|BX927671
EST:     AAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: AAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33656035|gb|CF278649.1|CF278649
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|11171566|gb|AU163851.1|AU163851
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|33693227|gb|CF321466.1|CF321466
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|218485429|gb|FG969304.1|FG969304
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCA-                         -TCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATATAACATGCT
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCAT-TAACATGCT
EST: gi|29617931|gb|CB622943.1|CB622943
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTATTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|89167331|gb|CI252862.1|CI252862
EST:     CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: CCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
EST: gi|89187438|gb|CI264257.1|CI264257
EST:     GCGGTTGAGGCAG                         ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG
genomic: GCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 58 (upstream exon), 74 (downstream exon)
Score: 287

TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttat ... gattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacag

- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - GCAGCT