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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCAgtaagttgtcatactttatcttgttgcatgctacttccactgtgccattaatgttatttatttttaactacagataaatgctctttttggtaccctacta...

Basic information

species Oryza sativa
transcript LOC_Os08g10600.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g10600.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G155729_T01 (Zea mays), 5'ss of exon 4
GGAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCAgtaagttgtcatactttatcttgttgcatgctacttccactgtgcc--attaatgttatttatttttaactacagataaatgctctttttggtaccctacta
|| || ||||||||||||||||| || |||||||| ||||||||||  ||  ||   | |   ||| ||  || ||   || |     |||| || |||  | ||  | ||| |   | |   | |||  ||        | 
GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAgtaagtcttcccacccaagcc-attgaattttagttttgctttcttcaattagtgctatgaaattagacctaaaagcacacattttttggggcgtgaattt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218500747|gb|FG962718.1|FG962718
EST:     GCAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCA                         GCATCGGGCTTCCATCTGGAAAGTCACTTTTCCAACTTCAAGCTGAACGAA
genomic: GGAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCAgtaagttgtc ... ttctgctcagGCATCGGGCTTCCATCTGGAAAGTCACTTTTCCAACTTCAAGCTGAACGAA
EST: gi|27576482|gb|CA999176.1|CA999176
EST:     AAGGGATGCTTCA                         GCATCGGGCTTCCATCTGGAAAGTCACTTTTCCAACTTCAAGCTGAACGAA
genomic: AAGGGATGCTTCAgtaagttgtc ... ttctgctcagGCATCGGGCTTCCATCTGGAAAGTCACTTTTCCAACTTCAAGCTGAACGAA
EST: gi|29616664|gb|CB621676.1|CB621676
EST:     GGAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCA                         GCATCGGGCTTCCATCTGGAAAGTCACTTTTCCAACTTCAAGCTGAACGAA
genomic: GGAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCAgtaagttgtc ... ttctgctcagGCATCGGGCTTCCATCTGGAAAGTCACTTTTCCAACTTCAAGCTGAACGAA