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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTGGATCAAAATTACTTGTCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATTgtaagagttgtactttaagttttcctgcattgtccttattagttagtgttttgtttgaatcatccttcttccttttgtaataaaaaaaag

Basic information

species Oryza sativa
transcript LOC_Os08g10310.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626560|gb|CB631571.1|CB631571
EST:     TCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATT                         GCACGTGGGATTCAATCCACTCTCAGGATCACTTCCAAAGGAACTTGGAAA
genomic: TCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATTgtaagagttg ... taaaaaaaagGCACGTGGGATTCAATCCACTCTCAGGATCACTTCCAAAGGAACTTGGAAA
EST: gi|29629813|gb|CB634822.1|CB634822
EST:     TCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATT                         GCACGTGGGATTCAATCCACTCTCAGGATCACTTCCAAAGGAACTTGGAAA
genomic: TCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATTgtaagagttg ... taaaaaaaagGCACGTGGGATTCAATCCACTCTCAGGATCACTTCCAAAGGAACTTGGAAA
EST: gi|29672540|gb|CB668815.1|CB668815
EST:     TCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATT                         GCACGTGGGATTCAATCCACTCTCAGGATCACTTCCAAAGGAACTTGGAAA
genomic: TCAGGCCCCATACCATCATTCATTGGGCAATTGACTGCCTTGACAGAATTgtaagagttg ... taaaaaaaagGCACGTGGGATTCAATCCACTCTCAGGATCACTTCCAAAGGAACTTGGAAA