1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCACGGTTGGACAGTTTGTGTATGTTGTTCGGAAGCGGATCAAGCTCAGTGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaatatgagctctgggagcactcagttcaacatcaacataaaaaaaaatcataattgcgtgatccctaaaatgccttgttgcattgctcctacag
species | Oryza sativa |
transcript | LOC_Os08g09240.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTGAGAAGGCAATCTTCATTTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|33657525|gb|CF280139.1|CF280139
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|88513812|gb|CI441318.1|CI441318
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|88963125|gb|CI026798.1|CI026798
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|88320862|gb|CI528014.1|CI528014
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|88974162|gb|CI002783.1|CI002783
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|89168539|gb|CI038893.1|CI038893
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|88846353|gb|CI373121.1|CI373121
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|88833607|gb|CI077088.1|CI077088
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCNATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|33671347|gb|CF299586.1|CF299586
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|58590250|gb|CF988558.1|CF988558
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|58586677|gb|CF984985.1|CF984985
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|163926759|gb|EG715047.1|EG715047
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCCEST: gi|218487512|gb|FG953689.1|FG953689
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
EST: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAG CTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
genomic: TGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaat ... gctcctacagCTGCCCTGATGTCCGCTATCTATGAGGAGAACAAGGATGAGGACGGCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACGGTTGGACAGTTTGTGTATGTTGTTCGGAAGCGGATCAAGCTCAGTGCTGAGAAGGCAATCTTCATCTTCGTCAAGAACACGCTTCCACCAACAGgtatggcaatatgagctctgggagcactcagttcaacatcaacataaaaaaaaatcataattgcgtgatccctaaaatgccttgttgcattgctcctacag
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