1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAAACTTCTCACAGAAAAAGGTTCAGGTGATGGTGCGGATAGCGCAGATGACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAGgtttgctctcccatttatgttttcttgtgttatccctcttagcatgtaaatgggatttagaattagaagtttcaaattctgaagttgatttagtatccag...
species | Oryza sativa |
transcript | LOC_Os08g08000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAG GGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAGEST: gi|29634713|gb|CB639722.1|CB639722
genomic: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAGgtttgctctc ... aatatatcagGGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAG
EST: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAG GGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAGEST: gi|29644348|gb|CB649355.1|CB649355
genomic: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAGgtttgctctc ... aatatatcagGGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAG
EST: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAG GGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAGEST: gi|58654091|gb|CK042771.1|CK042771
genomic: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAGgtttgctctc ... aatatatcagGGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAG
EST: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAG GGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAG
genomic: ACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAGgtttgctctc ... aatatatcagGGTAGTGCTAGACACCTGTTCCAGCGCCTTCAAGGACCGTTCGAGGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAACTTCTCACAGAAAAAGGTTCAGGTGATGGTGCGGATAGCGCAGATGACTCGGGCTCATCACAACACTATCAGTCCACATTGCCTGGCATCCCAAAGgtttgctctcccatttatgttttcttgtgttatccctcttagcatgtaaatgggatttagaattagaagtttcaaattctgaagttgatttagtatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc