1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGGGAGGCACCTCCGGATATGCAGTGCAAGGATAAGTTCCTTGTTCAAAGTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATGgtaactactttgcagctcttcattttgtgttgtttcaatcaatttgctatatgcatctgttacaacatctcatcccttatgtttttattatgataacag
species | Oryza sativa |
transcript | LOC_Os08g05890.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATG TTCAATAAGGTGGCAGGAAAGGTTGTTGAGGAATTCAAGCTACGTGTAGTCEST: gi|113931029|gb|DQ884122.1|DQ884122
genomic: GTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATGgtaactactt ... atgataacagTTCAATAAGGTGGCAGGAAAGGTTGTTGAGGAATTCAAGCTACGTGTAGTC
EST: GTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATG TTCAATAAGGTGGCAGGAAAGGTTGTTGEST: gi|300216296|gb|HO088081.1|HO088081
genomic: GTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATGgtaactactt ... atgataacagTTCAATAAGGTGGCAGGAAAGGTTGTTG
EST: GTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATG TTCAATAAGGTGGCAGGAAAGGTTGTTGAGGAATTCAAGCTACGTGTAGTC
genomic: GTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATGgtaactactt ... atgataacagTTCAATAAGGTGGCAGGAAAGGTTGTTGAGGAATTCAAGCTACGTGTAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGAGGCACCTCCGGATATGCAGTGCAAGGATAAGTTCCTTGTTCAAAGTGTTGCAGCTGAGAATGGTGCAACAACTCAAGATATTAGTGCAGAAATGgtaactactttgcagctcttcattttgtgttgtttcaatcaatttgctatatgcatctgttacaacatctcatcccttatgtttttattatgataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA