1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGGTGGTGCTGCTCCAGTTGCTGCTGCTGCTGCCCCTGCTGCTGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctatacatacaatttgcttgttatttttgtcatgacacatgtatgttttgttttgttttgtaacttacaaatgtcttggttttcctcttatcag
species | Oryza sativa |
transcript | LOC_Os08g02340.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88661157|gb|CI451272.1|CI451272
genomic: GCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCNAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88482705|gb|CI419976.1|CI419976
genomic: CCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGANCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88288178|gb|CI515322.1|CI515322
genomic: CCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CTGCTGCTGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88501929|gb|CI429435.1|CI429435
genomic: CTGCTGCTGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CTGGCGGTGGTNCTGCTNCTGCCCCAGCTGCCGAGGAGAANAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88255129|gb|CI353953.1|CI353953
genomic: CTGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: TGGCGGTGGTGCTGCTGCTGCCCCATCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAGEST: gi|89170762|gb|CI040039.1|CI040039
genomic: TGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGA-
EST: GCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88488365|gb|CI425636.1|CI425636
genomic: GCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: GTGGTNCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88555580|gb|CI485847.1|CI485847
genomic: GTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88374049|gb|CI510867.1|CI510867
genomic: CTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: TGGCGGT-GTGATGCTGCTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88517857|gb|CI444426.1|CI444426
genomic: TGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACEST: gi|88559417|gb|CI489989.1|CI489989
genomic: CTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
EST: CTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAG GAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
genomic: CTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctata ... ctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGGTGCTGCTCCAGTTGCTGCTGCTGCTGCCCCTGCTGCTGGCGGTGGTGCTGCTGCTGCCCCAGCTGCCGAGGAGAAGAAGgtgagctatacatacaatttgcttgttatttttgtcatgacacatgtatgttttgttttgttttgtaacttacaaatgtcttggttttcctcttatcag
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG