1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATGgtaatcttaaatatacaactcctcacatgatatgtgggtaatgatacaggtataactgtgcctttgcttacagcattctttttatgcatttccag
species | Oryza sativa |
transcript | LOC_Os08g01760.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTATTCCTTCGTAGCAATG GAAAGCCAGTGTACATGTATAGTCTGGGTGGGCTATGCAGAATATTGCGTTEST: gi|2312625|gb|C28780.1|C28780
genomic: ATTATTCCTTCGTAGCAATGgtaatcttaa ... gcatttccagGAAAGCCAGTGTACATGTATAGTATGGGTGGGCT-TGCAGAATATTGCGTT
EST: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG GAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTGEST: gi|44674419|gb|CR287853.1|CR287853
genomic: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATGgtaatcttaa ... gcatttccagGAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTG
EST: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG GAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTGEST: gi|7593811|gb|AU065734.2|AU065734
genomic: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATGgtaatcttaa ... gcatttccagGAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTG
EST: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG GAAAGCCAGTGTACATGTATAAGTATGGEST: gi|66916958|gb|CX103806.1|CX103806
genomic: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATGgtaatcttaa ... gcatttccagGAAAGCCAGTGTACATGTATA-GTATGG
EST: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG GAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTG
genomic: TAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATGgtaatcttaa ... gcatttccagGAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATGgtaatcttaaatatacaactcctcacatgatatgtgggtaatgatacaggtataactgtgcctttgcttacagcattctttttatgcatttccag
- - - - - - - - - - - - - - - - - - - - - - - AAGGAA