Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCACGACGAGTCAACTTCTCGGCAGAAGGTTGATGATGTTCAAGAGGGTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactcatattttgggttgctaaaatgctatctttctataatctagatgtgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatag

Basic information

species Oryza sativa
transcript LOC_Os07g47580.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G174204_T01 (Zea mays), 5'ss of exon 4
AATGCACGACGAGTCAACTTCTCGGCAGAAGGTTGATGATG---TTCAAGAGGGTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactcatattttgggttgctaaaatgctatctttctataatctagatgtgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatag
   |||||| || |||| |   || ||||||||||||||||   | |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||   |     | |||||| ||      |    ||   ||  |    || |  | |||  | | |    ||||   || ||  || | |  |    ||| ||      
---GCACGATGAATCAAATAAGCGACAGAAGGTTGATGATGATGTCCAAGAGGGTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattactgt-ttttggcttctctccagctaattactccctctgttacaaatcataggccacttcgatttttgttggttc-ataaattttgctatgtaaa------

upper sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G009876_T01 (Zea mays), 5'ss of exon 4
AATGCACGACGAGTCAACTTCTCGGCAGAAGGTTGATGATG---TTCAAGAGGGTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactcatattttgggttgctaaaatgctatctttctataatctagatgtgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatag
   ||||||||| |||| |   || ||||||||||||||||   | |||||||||||||||||||| ||||||||||| |||||||||||||| || || ||||| |  | |  | || | || |            ||| || |    |||  | |||||||      ||| ||| |  |  ||||||| | ||||   |||||   |||
---GCACGACGAATCAAATAAACGACAGAAGGTTGATGATGATGTCCAAGAGGGTGCTCTTCCTCCGTATCTGCTGGATCGTGATCAGACACAGCGCGCTAAGgtga--attactgttcttggct------------tctctccag---ctaattatgatacag----taacgttttatggcattgatcactgatatctggtgaagtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87008746|gb|CI302901.1|CI302901
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGA
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGA
EST: gi|58689868|gb|CK078555.1|CK078555
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33653812|gb|CF276426.1|CF276426
EST:     GTGCTCTTCCTCCACATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATNG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAAT-G
EST: gi|88395389|gb|CI611306.1|CI611306
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88302583|gb|CI668429.1|CI668429
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33688902|gb|CF317141.1|CF317141
EST:     GTGCTCTTCCTCCATATCTGCCGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAANTG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAA-TG
EST: gi|218487556|gb|FG947559.1|FG947559
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88394705|gb|CI622579.1|CI622579
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|218486392|gb|FG950823.1|FG950823
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|12622982|gb|AU173195.1|AU173195
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|218488945|gb|FG960620.1|FG960620
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|29624519|gb|CB629530.1|CB629530
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88351380|gb|CI627396.1|CI627396
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGGCAAAAGAGGATGGAAAAGGCTGGCAAATG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAG-CAAAAGAGGATGGAAAAGGCTGGCAAATG
EST: gi|29662524|gb|CB658799.1|CB658799
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|218483549|gb|FG959691.1|FG959691
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|29668015|gb|CB664290.1|CB664290
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33813020|gb|CF332400.1|CF332400
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGC
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGC
EST: gi|87011090|gb|CI287767.1|CI287767
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTA
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTA
EST: gi|218489207|gb|FG951304.1|FG951304
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|29668016|gb|CB664291.1|CB664291
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|218490089|gb|FG957774.1|FG957774
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33814059|gb|CF332914.1|CF332914
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAA-TGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|58681353|gb|CK070040.1|CK070040
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88333766|gb|CI643798.1|CI643798
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88570881|gb|CI662254.1|CI662254
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAG
EST: gi|33658076|gb|CF280690.1|CF280690
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88330377|gb|CI633584.1|CI633584
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGA
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGA
EST: gi|88364720|gb|CI612535.1|CI612535
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33657881|gb|CF280495.1|CF280495
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|86887864|gb|CI297975.1|CI297975
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATT
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATT
EST: gi|33794028|gb|CF322904.1|CF322904
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88851570|gb|CI671010.1|CI671010
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACCACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAAC-ACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATG
EST: gi|87022128|gb|CI259200.1|CI259200
EST:     CAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: CAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|218480798|gb|FG956053.1|FG956053
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|38469043|gb|CF953174.1|CF953174
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33692111|gb|CF320350.1|CF320350
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88399306|gb|CI618496.1|CI618496
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAACTTAC-CAAAAGAGGATGGAAAAGGCTGGCAAATG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAA-TTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATG
EST: gi|58678013|gb|CK066700.1|CK066700
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|33809375|gb|CF330567.1|CF330567
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|313079531|gb|HO213089.1|HO213089
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCGGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: gi|88330904|gb|CI638312.1|CI638312
EST:     GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG                         GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCT
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 58 (upstream exon), 69 (downstream exon)
Score: 108

AATGCACGACGAGTCAACTTCTCGGCAGAAGGTTGATGATGTTCAAGAGGGTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGGAGGTTCCTTTGCCAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGCACGACGAGTCAACTTCTCGGCAGAAGGTTGATGATGTTCAAGAGGGTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactcatattttgggttgctaaaatgctatctttctataatctagatgtgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA