Sequence
atgc intronic sequence ATGC exonic sequenceATTCAAAGATTTCCCACAATCAGCACTGCGACTTATTGAAACACTACTTGCAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAAgtaagttgtcctagtttttgccattctgttcctattttattgaaatgagaaaattgaggttctgaacttatgaattcaaattatacctaaaatatttcat...
Basic information
species | Oryza sativa |
transcript | LOC_Os07g47180.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G333433_T01 (Zea mays), 5'ss of exon 4
ATTCAAAGATTTCCCACAATCAGCACTGCGACTTATTGAAACACTACTTGCAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAAgtaagttgtcctagtttttgccattctgttcctattttattgaaatgagaaaattgaggttctgaacttatgaattcaa-attatacctaaaatatttcat
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ATTCAAAGATTTCCCTCAATCAGCACTTCGACTGATCGAGACACTACTTGCAATTGATCCAGCTGATCGGTTAACGGCAACTTCTGCATTGAACAGTGATgtaagttgtctgggttgttatcattttgttgttattttctttaccaacgaaaacatcaactttgc-tttatggattaattatcttccctgatgttattaat
upper sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G873277_T01 (Zea mays), 5'ss of exon 4
ATTCAAAGATTTCCCACAATCAGCACTGCGACTTATTGAAACACTACTTGCAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAAgtaagttgtcctagtttttgccattctgttcctattttattgaaatga-gaaaattgaggttctgaactt-atgaattcaa-attatacctaaaatatttcat
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ATTCAAAGATTTCCCTCAATCAGCACTTCGACTGATCGAGACACTACTTGCAATCGATCCATCTGACCGATTAACTGCAACTTCTGCATTGAACAGTGATgtaagttgtctgagttgttatcattctgttcttttttttctttaccaaagaaaacactgattttttgcttcatggattaattactttactcgatgtcatt---
upper sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv14s0030g01260.t01 (Vitis vinifera), 5'ss of exon 7
ATTCAAAGATTTCCCACAATCAGCACTGCGACTTATTGAAACACTACTTGCAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAAgtaagttgtcctagtttttgccattctgttcctattttattgaaatgagaaaattgaggttctgaact-tatgaattc---aaattatacctaaaatatttcat-
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ATTCAAAGACTTCCCACCATCTTCACTGCCACTTATTGAAACTCTTCTTGCAATTGATCCAGTGGAACGTCGGACAGCCACAGCTGCATTAAACTGTGAAgtgagttcttata----ttcctataagcaacctttttcacttca-tatgcccatttatatcttagactatgttggtccttgacgttaaggttgttatggcttgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86497666|gb|CI140299.1|CI140299EST: CAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAA TTCTTTAAAACGGAACCACATGCATGTGATCCATCAAGTTTACCCCAATAC
genomic: CAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAAgtaagttgtc ... ataaacacagTTCTTTAAAACGGAACCACATGCATGTGATCCATCAAGTTTACCCCAATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAAAGATTTCCCACAATCAGCACTGCGACTTATTGAAACACTACTTGCAATCGACCCAGCTGATCGTTTAACAGCGACTTCTGCGTTAGAAAGTGAAgtaagttgtcctagtttttgccattctgttcctattttattgaaatgagaaaattgaggttctgaacttatgaattcaaattatacctaaaatatttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT