1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACgtaagtagattttcccctttcgttatgcatgtgttattttttttccttatgttgaattcagcgtttcatttgcatatgtgatcctgttacattgtacatcacttgtggtaatagacatgcaactctcatggtgtttcag
species | Oryza sativa |
transcript | LOC_Os07g44350.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC GTACCAAAGCAGCCTGGGTAATAAGAGGATTGAACTATTTGATACTGGTAAEST: gi|569629|gb|D40478.1|D40478
genomic: ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACgtaagtagat ... ggtgtttcagGTACCAAAGCAGCCTGGGTAATAAGAGGATTGAACTATTTGATACTGGTAA
EST: ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC GTACCAAAGCAGCCTGGGTAATAAGAGGATTGAACTATTTGATACTGGTAAEST: gi|58596898|gb|CK007426.1|CK007426
genomic: ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACgtaagtagat ... ggtgtttcagGTACCAAAGCAGCCTGGGTAATAAGAGGATTGAACTATTTGATACTGGTAA
EST: ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC GTACCAAAGCAGCCTGGGTAATAAGAGGATTGAACTATTTGATACTGGTAA
genomic: ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACgtaagtagat ... ggtgtttcagGTACCAAAGCAGCCTGGGTAATAAGAGGATTGAACTATTTGATACTGGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACgtaagtagattttcccctttcgttatgcatgtgttattttttttccttatgttgaattcagcgtttcatttgcatatgtgatcctgttacattgtacatcacttgtggtaatagacatgcaactctcatggtgtttcag
- AAAGAA