1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAACTCTGGACAGATTGTCACATGGATTACTGATCCCATGCATGGAAACACCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtatttttctgctacagcattccatatttgctagtatcctttcctagtatgatgcaacaatccggtcaatctcacataaggaattaccctcattcc...
species | Oryza sativa |
transcript | LOC_Os07g42960.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATGAAGGCTCCATGTGTTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|86498949|gb|CI141582.1|CI141582
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|86854460|gb|CI256582.1|CI256582
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: TGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|87010184|gb|CI279281.1|CI279281
genomic: TGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|86504176|gb|CI146809.1|CI146809
genomic: CAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTTTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|88841088|gb|CI001050.1|CI001050
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|86502154|gb|CI144787.1|CI144787
genomic: CGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTTTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|86499909|gb|CI142542.1|CI142542
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCA-CCAEST: gi|86492916|gb|CI135549.1|CI135549
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|88226857|gb|CI224842.1|CI224842
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: GAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|87035027|gb|CI189651.1|CI189651
genomic: GAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|86513894|gb|CI156527.1|CI156527
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|88964674|gb|CI070020.1|CI070020
genomic: CCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: ATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAEST: gi|5003537|gb|AU068686.1|AU068686
genomic: ATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
EST: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTG GCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
genomic: CCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtattt ... tgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTCTGGACAGATTGTCACATGGATTACTGATCCCATGCATGGAAACACCATCAAGGCTCCATGTGGTCTGAAGACTCGTCCATTCGATTCCATTCTGgtgagtatttttctgctacagcattccatatttgctagtatcctttcctagtatgatgcaacaatccggtcaatctcacataaggaattaccctcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA