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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCGGCTGATACCTGGGGTGGAGAATGGGGCACTGACGCTGCAGCTCAACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattacttaatactctgtttacatgatcacattctaaatgcatgcattccatagaaagaaaactaccttgtaaccaaatgcaacgtgctctcgtttgatgttttatcgggttcttgcctaacccttaaagttctcacatgttgatatttattctcaattgcag

Basic information

species Oryza sativa
transcript LOC_Os07g42450.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88838994|gb|CI012870.1|CI012870
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86821489|gb|CI266865.1|CI266865
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86884194|gb|CI311648.1|CI311648
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86543008|gb|CI183214.1|CI183214
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88834094|gb|CI077575.1|CI077575
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86484672|gb|CI127305.1|CI127305
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88956487|gb|CI092733.1|CI092733
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88251331|gb|CI349759.1|CI349759
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGAT-GGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88220892|gb|CI218743.1|CI218743
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|2312443|gb|C28598.1|C28598
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGNATGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGG-ATGG
EST: gi|86250890|gb|CI007753.1|CI007753
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|94362534|gb|CI052653.1|CI052653
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86540460|gb|CI180666.1|CI180666
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|58681997|gb|CK070684.1|CK070684
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGG                         T
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCA-Ggtcgaattac ... tcaattgcag-
EST: gi|58681997|gb|CK070684.1|CK070684
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGG                         T
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCA-Ggtcgaattac ... tcaattgcag-
EST: gi|58681997|gb|CK070684.1|CK070684
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGG                         T
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCA-Ggtcgaattac ... tcaattgcag-
EST: gi|86854236|gb|CI254181.1|CI254181
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|87038852|gb|CI193474.1|CI193474
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86255009|gb|CI017129.1|CI017129
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGCGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88241737|gb|CI241586.1|CI241586
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88219054|gb|CI220614.1|CI220614
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|89175022|gb|CI041100.1|CI041100
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88218884|gb|CI216882.1|CI216882
EST:     GCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: GCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88847336|gb|CI011279.1|CI011279
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88205881|gb|CI205730.1|CI205730
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGTCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88838973|gb|CI012849.1|CI012849
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86434559|gb|CI105792.1|CI105792
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|87038900|gb|CI193522.1|CI193522
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88834464|gb|CI077747.1|CI077747
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|89197054|gb|CI021894.1|CI021894
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88490166|gb|CI427438.1|CI427438
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86530972|gb|CI171178.1|CI171178
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86434604|gb|CI105837.1|CI105837
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88984221|gb|CI020139.1|CI020139
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|218498639|gb|FG958416.1|FG958416
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|87028612|gb|CI266011.1|CI266011
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|88967652|gb|CI016167.1|CI016167
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86418716|gb|CI053517.1|CI053517
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86426237|gb|CI071334.1|CI071334
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|8857538|gb|AU094856.1|AU094856
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86527837|gb|CI168043.1|CI168043
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: gi|86854195|gb|CI254140.1|CI254140
EST:     ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG                         CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 28

CCAGCGGCTGATACCTGGGGTGGAGAATGGGGCACTGACGCTGCAGCTCAACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGAACAAGGCAGTGCACCAGTCCCAGCGGCAGCACCCACCCCTAACTGGGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGCGGCTGATACCTGGGGTGGAGAATGGGGCACTGACGCTGCAGCTCAACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattacttaatactctgtttacatgatcacattctaaatgcatgcattccatagaaagaaaactaccttgtaaccaaatgcaacgtgctctcgtttgatgttttatcgggttcttgcctaacccttaaagttctcacatgttgatatttattctcaattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT