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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatctacttttccctaaggaaaatgaaagccgtttcacaatttttcttactttatggaccaaataggttacttcttctttcttgtgtctgaatgc...

Basic information

species Oryza sativa
transcript LOC_Os07g32230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g32230.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G025242_T02 (Zea mays), 5'ss of exon 4
GGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatctactttt--ccctaaggaaaatgaaagccgtttcacaatttttctta---ctttatggaccaaataggttacttcttctttcttgtgtctgaatgc
|||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||| |  | |   ||  || |    |      | ||   ||  |||||| |   ||||||  |   ||      ||   |  ||   |   | |      
GGTTCTCTTCTACCACTTGTTTGCTAAAGAGCTGGCACCTCACAAGCCTCTTGCAAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtatacatatcatctcgacctgaatggccgtttggttccttcttcagcttttctgaaagctttatttatataactttgcacgagtgattctcttgatttc-----

upper sequence: LOC_Os07g32230.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA15G07390.1 (Glycine max), 5'ss of exon 3
GGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaa--tcatctacttttccctaaggaaaatgaaagccgtttcacaatttttcttactttatggaccaaataggttacttcttctttcttgtgtctgaatgc--
|||  | || |||||  ||||||| ||||| |||||||| ||||| ||||| || |||||||| ||||||||||| ||||| |||||||  || ||||||||||  ||||   | |||   |||  |      |||| |  | | |    |    ||||   |    ||| ||          |   |  | |  | ||  |  
GGTGGTCTTTTACCATGTGTTTGCTAAAGAACTGGCACCACACAAGCCTCTAGCGAAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAGgtaaactcattatcatttatataatcatctgataagctgagttaaa----tgaccacttagagccataaaaagcagcacagagccaacaagagaataaactcga

upper sequence: LOC_Os07g32230.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G31920.2 (Glycine max), 5'ss of exon 3
GGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatctacttttccctaaggaaaatgaaagccgtttcacaatttttcttactttatggaccaaata-ggttacttcttctttcttgtg--tctgaatgc---
|||  | || |||||  ||||||| ||||| |||||||| ||||||||||| || |||||||| ||||||||||| ||||| |||||||  || ||||||||||       ||  | |  ||  | ||  |||        | ||  | | ||    ||| ||   ||||    || ||   ||  ||  ||  ||| ||      
GGTGGTCTTTTACCATGTGTTTGCTAAAGAACTGGCACCACACAAACCTCTAGCTAAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAGgtaa------gctcatacagaaaaagaacaaaaaaacaaaaaaaacctgtgtttacatatagaatcaatataaataattggactagctgatggttctcaaccattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88987063|gb|CI034104.1|CI034104
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|22304929|gb|BQ906151.1|BQ906151
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|55408517|gb|CV720893.1|CV720893
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|89168633|gb|CI038485.1|CI038485
EST:     TTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GTTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|86413511|gb|CI019096.1|CI019096
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|89192023|gb|CI393380.1|CI393380
EST:     CTTTCTGGCAGG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCA
genomic: CTTTCTGGCA-Ggtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCA
EST: gi|89196563|gb|CI400733.1|CI400733
EST:     TTGCCAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|87038307|gb|CI192929.1|CI192929
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|89182717|gb|CI114086.1|CI114086
EST:     GATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: GATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|86841734|gb|CI337412.1|CI337412
EST:     CTTCTTCTCTTTCTGCCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: CTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|38480495|gb|CF964584.1|CF964584
EST:     CTTCTTCTCTTTCTGCCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: CTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|33680755|gb|CF308994.1|CF308994
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|86536155|gb|CI176361.1|CI176361
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|89173551|gb|CI041444.1|CI041444
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|33682369|gb|CF310608.1|CF310608
EST:     TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: TTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
EST: gi|88262975|gb|CI366749.1|CI366749
EST:     CTTTCTGGCAG                         GGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT
genomic: CTTTCTGGCAGgtaatcatct ... ctttttgcagGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCAT