1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgctatttctgttttcttagttcaatatgtaccatatcaaccatctcttccatttcttgtgcatagtttaaagacgtcaggtctgttactctgcactgatattgatctttgtgttaaactggcaaactgatcattgagccatgtgcttgaactcactgacctttttgcactctag
species | Oryza sativa |
transcript | LOC_Os07g29630.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGEST: gi|88210242|gb|CI210091.1|CI210091
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAG
EST: CTCCAGAATTGGCTGCCACCATGCAAGAA--T--TAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|33683745|gb|CF311984.1|CF311984
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|88848803|gb|CI087325.1|CI087325
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|33682994|gb|CF311233.1|CF311233
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|58587083|gb|CF985391.1|CF985391
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|87018162|gb|CI277744.1|CI277744
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|86595612|gb|CI264709.1|CI264709
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACEST: gi|86495728|gb|CI138361.1|CI138361
genomic: CTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAG GCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
genomic: CTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgct ... tgcactctagGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGgtaatccgctatttctgttttcttagttcaatatgtaccatatcaaccatctcttccatttcttgtgcatagtttaaagacgtcaggtctgttactctgcactgatattgatctttgtgttaaactggcaaactgatcattgagccatgtgcttgaactcactgacctttttgcactctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA