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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCGTCTGAGCTGAAGCAGATCCCGGTGGTGATAATGTCGTCAGAGAACGTGCCCACAAGGATCAGCAGgtgagtgagcccgtctcttcaccgatcaagcgtgacatgctttttttaattctcttgccaagtgttacccttgacaaaagaaagatgctgtgttttttttctctattggtttcag

Basic information

species Oryza sativa
transcript LOC_Os07g26720.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26720.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G148056_T01 (Zea mays), 5'ss of exon 4
GAATCGTCTGAGCTGAAGCAGATCCCGGTGGTGATAATGTCGTCAGAGAACGTGCCCACAAGGATCAGCAGgtgagtgagcccgtctcttcaccgatcaagcgtgacatgctttttttaattctcttgccaagt-gttacccttgacaaaagaaagatgctgtgttttttttctctattggtttcag
|| || ||  ||||||||| |||||| |||||||| ||||| ||||||||||||||||| || |||| |||||  |     |  |     ||||   ||| ||     ||    | |     |   ||   ||| || |  | ||||||||    || || | || | |||| |  |          
GAGTCTTCGAAGCTGAAGCGGATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAGgtctgcttctcgatagaaccaccagccaaccgcatattggcagtgtccccaccgatgatgagtcgtgagtcctgacaaaattt-gacgc-gagtctgtttttttcag---------