1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAGTTTAGCTGCTACTATGCTGCTCCATGGAATGGACGATCAGGCTTTCACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctcttgtttcactatatttatgtttcctgtcctagcatctgtggccaataacacgctttgtgtttttctgctgatagatgtaagatgatgccc...
species | Oryza sativa |
transcript | LOC_Os07g26210.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCEST: gi|29662663|gb|CB658938.1|CB658938
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCEST: gi|86427031|gb|CI072128.1|CI072128
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCEST: gi|29671834|gb|CB668109.1|CB668109
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTTTAGCTGCTACTATGCTGCTCCATGGAATGGACGATCAGGCTTTCACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctcttgtttcactatatttatgtttcctgtcctagcatctgtggccaataacacgctttgtgtttttctgctgatagatgtaagatgatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG