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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTACTCCCAAGGGTGTGTTAAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagttgtccctattgcatgatatttttgtgaaaaaaaattattcttatcttttcattttgagttaatttattttgcag

Basic information

species Oryza sativa
transcript LOC_Os07g25710.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g25710.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G162409_T01 (Zea mays), 5'ss of exon 4
AAGCTACTCCCAAGGGTGTGTTAAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagttgtccctattgcatgatatttttgtgaaaa----aaaattattcttatcttttcattttgagttaatttattttgcag
|||| ||||| ||||||||  | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||  |  ||||||||   ||  || |||  || |    |||||||||||  | | |  |||||   | |   | | || |||
AAGCAACTCCTAAGGGTGTCCTGAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatctagccctattgttggacgttattgaaaatagctgaaaattattctc-tatctgaattttatctaacaatgtgtttcag

upper sequence: LOC_Os07g25710.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G162409_T05 (Zea mays), 5'ss of exon 3
-----------------------AAGCTACTCCCAAGGGTGTGTTAAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagttgtccctattgcatgatatttttgtgaaaa----aaaattattcttatcttttcattttgagttaatttattttgcag
                       |||| ||||| ||||||||  | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||  |  ||||||||   ||  || |||  || |    |||||||||||  | | |  |||||   | |   | | || |||
ACATTTTCCTTAAATTGTTGCAGAAGCAACTCCTAAGGGTGTCCTGAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatctagccctattgttggacgttattgaaaatagctgaaaattattctc-tatctgaattttatctaacaatgtgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669237|gb|CK057923.1|CK057923
EST:     TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAG                         AAATACAGAACAGCTCG
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagt ... tattttgcagAAATACAGAACAGCTCG