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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGgtgactttctgtccttttcttgcatacaaggaaagctatcatgctttaaccgttccttgccacactgtatttttcag

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G130351_T01 (Zea mays), 5'ss of exon 4
GGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGgtgactttctgtccttttcttgcatac------aaggaaagctatc-------atgctttaaccgttccttgccacactgtattt--ttcag
||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||  |||||||||||||||| ||||| |   ||| |   | |       ||||||| | ||        |||||||||| ||| ||||   |||   || |  |||||
GGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAACCCTGAATCACAGgtgattttctataaatttatcatagaactgacaaaggaaaacaatttgtgtttatgctttaactgttgcttgttgcacaacatctgtttcag

upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G044317_T04 (Zea mays), 5'ss of exon 4
GGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGgtgactttctgtccttttcttgcata-----caaggaaagcta--------tcatgctttaaccgttccttgc--cacactgtatttttcag
||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| || ||| |||     | |     ||| | ||  ||        | |||||||||| ||| ||||   ||||   | | ||||||
GGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAGTCCTGAAACACAGgtgacttcctatccatttaccatagaactgacaaaggaaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665435|gb|CK054121.1|CK054121
EST:     AGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAG                         AGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCG
genomic: AGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGgtgactttct ... tatttttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCG