1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAgtatgttgtgttgatctaactggaaggaagtcatacttaaaatactacttgctaagtttatgataaataatgctagataagccttgaaagttttcaacacactggacaattcaatgttaaattgcttttctttttcacttgcccaacacattctggtgacaaaactgtatttactttaag
species | Oryza sativa |
transcript | LOC_Os07g19470.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAA GAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGEST: gi|163928829|gb|EG709732.1|EG709732
genomic: CCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAgtatgttgtg ... ttactttaagGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAG
EST: CCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAA GAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGEST: gi|86542020|gb|CI182226.1|CI182226
genomic: CCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAgtatgttgtg ... ttactttaagGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAG
EST: CCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAA GAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAG
genomic: CCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAgtatgttgtg ... ttactttaagGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAgtatgttgtgttgatctaactggaaggaagtcatacttaaaatactacttgctaagtttatgataaataatgctagataagccttgaaagttttcaacacactggacaattcaatgttaaattgcttttctttttcacttgcccaacacattctggtgacaaaactgtatttactttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA