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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTTATTTTAGGATGACTTGTGATGTTGCTCCCAAACTTGGTTTTCAGAAACCTTCACTGATTGAGTCAAGATTTTTCCCTGCACTTCAGgtatttcttttagggagagcttggatgtaggactgaacattagagctggtgcaatttgacgacttgtaattaacttgctcagaattttttttggttttacttcgaataatcataatttcacgtgcattactttatgtcgattgcttgatttccttttaacag

Basic information

species Oryza sativa
transcript LOC_Os07g17770.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g17770.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G002687_T01 (Zea mays), 5'ss of exon 6
GATCCTTATTTTAGGATGACTTGTGATGTTGCTCCCAAACTTGGTTTTCAGAAACCTTCACTGATTGAGTCAAGATTTTTCCCTGCACTTCAGgtatttcttttagggagagcttggatgtaggactgaacattagagctggtgcaatttgacgacttgtaattaacttgctcagaattttttttggttttacttcgaataatcataatttcacgtgcattactttatgtcgattgcttgatttccttttaacag
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GATCCATATTTTAGGATGACTCGTGATGTTGCTCCTAGAATTGGTTATCAGAAACCATCACTGATTGAATCTAGATTTTTTCCTGCTCTTCAGgtttgtt---------gaccttgactatttctagttaatttaaagttta---aatttg----cttgtggtttctttacc---------tttttattatatgtaaatagttcatagttcaagggcatttattttgtgtg---ttctttctttctttttcacag