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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcag

Basic information

species Oryza sativa
transcript LOC_Os07g17400.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G171967_T01 (Zea mays), 5'ss of exon 4
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgct-tgcaatttggatacatattctgagcctttcttttctga-actatgcag-
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    | |||||| ||   |   ||   ||  | |   |||  ||| |||||||||||||   |||  ||| ||   |    ||  ||  |  || 
TGGAAAGGGAGGATGAATGCGGGATTTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCTATAGGGACTGgtaattacc--tctcacaattttcattatctgtatgtgaatttgaacaggctatgcaatttggatatggatttcgagtctaattaaagtgctacattttagt

upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G439168_T02 (Zea mays), 5'ss of exon 5
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaactta-attgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctga-actatgcag-
||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||| ||    | |||||| ||  |||     |||    | | | |       ||||| |||||||   |||  ||| ||   |    ||  ||  |  || 
TGGAAAGGGAGGATGAATGCGGGATCTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCCATAGGGACTGgtaattacc--tctcacaattttcattatttgtatgtgaatttggataggctatgcaacttggatatggatttcgagtctaattaaagtgctacattttagt

upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcaca-------acttaattgcacttattgacagtagcaacctgcttgcaatttggatacatat-tctgagcctttcttttctgaactatgcag
||||||| || |||||||||||||| ||| | ||| | |||||||| |||||| ||||||||||| ||||||| ||||| || ||||||||| |  | |||||  || |  | | | |       | ||| | |  || | ||   ||   ||   |  |   ||     |   | | | || |  |    |   || |||      
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgt-ctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact------

upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA18G01460.2 (Glycine max), 5'ss of exon 5
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaa-----atagtattt--tcacaacttaattgca--cttat-tgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcag
|| |||| || |||||||||||||||||| | ||| | |||||||| |||||| | |||  |||| | ||||| ||||| || ||||||||| |  | ||||||     | |  ||||  | |      | || ||   |||| || || || |||     |  |  ||| |  || | |||||  | | |      || |        
TGCAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGgtaacaataacaacatttgtttatggtcaacttccaaatttatatgccattaccaatggcttatcttttttgtcacttgttctggacttattcaacttgcag-------

upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcag-------------
||||||| || ||||||||||| || ||| | ||| | |||||||| |||||| ||||||||||| ||||||| ||||| || ||||||||| |  | |||||     | | |||| |  |||      | ||||   ||| ||  | | |||   |||   ||   | || | | | ||| |||| ||||| |||                
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgta-----tgtattcata--ttagacatgcatatt--tagtcgc--cttactttatattcaaattggt-ttatcatcattttttttgtgaacaatggtcgcactgaggttcg

upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaat-agtattttcacaactta-attgcacttattgacagtagcaacctgcttgcaatttggatacat---attctga---gcctttcttttctgaactatgcag--------------------
|| ||||||| ||||||||||| |||||  ||||| | |||||||| |||||  ||||||||||| |||||||||||||||| || |||||| | ||||||||| |  |||  | ||    ||  |||    |||||  | ||  | | |  ||| | |  || ||||||   |||||     ||  || || | |  ||| | |                      
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttatt--ctgtctctaac-actttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag

upper sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv01s0010g02220.t01 (Vitis vinifera), 5'ss of exon 4
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcag----------
| || ||||| |||||||||||||| |||||||| || ||||||||||||||  | ||||| ||  | ||  | ||||||||    || |     ||||||||   |     | ||  | ||  || |  || |   || |      |   || || | || | | |  |  | |   |   | | || |||  || |           
TCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggca-----tccatgaattgctttcggttttctccattccatgacattttacattatgaacaaaactgtttatgttaaatgtactcaacgttgaattgaatcacag