Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTTGGCCCAAGTTACTTGTGCACAAGATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCGACTGAAAGTGAGgtaggctagctcttcagtttattttccatagtgttttcattatgagttttctgcttatattgttttgatcatattacaccatatcgttgttgaaagagaa...

Basic information

species Oryza sativa
transcript LOC_Os07g17040.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g17040.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G461793_T01 (Zea mays), 5'ss of exon 4
GAATTTTGGCCCAAGTTACTTGTGCACAAGATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCGACTGAAAGTGAGgtaggc---tagctcttcagt-ttattttccatagtgttttcattatgagttttctgcttatattgttttgatcatattacaccatatcgttgttgaaagagaa
||||||||||| ||| |||||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||   |   | || | |  ||||     ||||||  | ||| | |  | | |  |||| ||  ||   | | | |      | |  |   ||   | |  
GAATTTTGGCCTAAGCTACTTGTGCACAAGATCAAACAGCGGCTGACAAAAATGACTCAATATCGTATAAGAATGAGGAAACTTCAACTGAAAGTGAGgtaggcacttgtattttgaatactattggatgtagtgtagttatt-taaaatatatatttatgttcatt--gttagactgtgt-gtgttctctgtgtgtgggtg