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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAGgtaggctcttaggtttatttccatagtgttttcattatggtcttaagctgaacacgataaaattctattagagtgctgaactcatcaggttgaaaatctt...

Basic information

species Oryza sativa
transcript LOC_Os07g16950.5
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g16950.5 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G461793_T01 (Zea mays), 5'ss of exon 4
GAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAGgtaggctcttaggtttatttccatagtgttttcattatggtcttaagctgaacacgataaaattc--tattagagtgctgaactcatcaggttgaaaatctt
||||||||||| ||| ||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||   |||       || ||  |  | | | ||  |       | |   | |  |||  | ||||| ||      |  || |  ||    |   
GAATTTTGGCCTAAGCTACTTGTGCACAAGATCAAACAGCGGCTGACAAAAATGACTCAATATCGTATAAGAATGAGGAAACTTCAACTGAAAGTGAGgtaggcacttgtattttgaatactattggatgtagtgtagttatttaaaatatatatttatgttcattgttagactgtgtgtgttctctgtgtgtgggtg--

upper sequence: LOC_Os07g16950.5 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv17s0000g09220.t01 (Vitis vinifera), 5'ss of exon 5
GAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAGgtaggctcttaggtttatttccatag-tgttttcattatggtct---taagctgaacacgataaaattc--tattagagtgctgaactcatcaggttgaaaatctt
   |||||||| ||||| ||||| |||||||  |||||||| || || ||||||||||||   || ||  | ||||||||||||  | |||||   ||||       |    |  ||||  ||  |  |||   |||| | |     || | | ||  |  |  |||   |||||||     || | ||   ||||| |     
ATGTTTTGGCCGAAGTTGCTTGTTCACAAAACAAAGCAGCGTCTCACTAAAATGACTCAGATGCGAATTCGCATGAGGAAGCTTGCATTGAAAACAAGgtccatgtctt--ctcttttcagtaactccttttgatatgttttacacgagataatcatcacgattttcaacattagagaa---aattgattctgttgatagcta-

upper sequence: LOC_Os07g16950.5 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv14s0030g01480.t01 (Vitis vinifera), 5'ss of exon 14
GAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAGgtaggctcttaggtttatttccatagtgttttcattatggtcttaagctgaacacgataaaattctattagagtgctgaactca--tcaggttgaaaatctt
   |||||||| ||||| ||||| |||||||  |||||||| || || ||||||||||||   || ||  | ||||||||||||  | |||||   ||||       |    || |    |     ||||||        | |  |||   |     ||  |  |  ||  |  | |  |    |  | | |   ||   
ATGTTTTGGCCGAAGTTGCTTGTTCACAAAACAAAGCAGCGTCTCACTAAAATGACTCAGATGCGAATTCGCATGAGGAAGCTTGCATTGAAAACAAGgtccatgtcttctcttttcagtaactccttttcagagaaaattgattctgttgatagctaatatggaacagtttattaattttgagttggttcgcttatt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|427797|gb|D23935.1|D23935
EST:     AAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAG                         ANAGAAGGTGATGACAATGCCCAGGAAGGAGACTCAGCGCCATCTCAGAAG
genomic: AAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAGgtaggctctt ... cccttatcagAGAGAAGGTGATGACAATGCCCAGGAAGGAGACTCAGCGCCATCTCAGAAG