1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAGCACAGCTACAAGGATCCCATTACTGAATTTCTGGAATGCTTGTTTGTTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagcgcgtcttgaaccttttgtccatccccatgattaatctgttttttacttaatgcattattgttgaaatataaaatattgaaagataatttc...
species | Oryza sativa |
transcript | LOC_Os07g07250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCCEST: gi|29616632|gb|CB621644.1|CB621644
genomic: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
EST: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCCEST: gi|29616633|gb|CB621645.1|CB621645
genomic: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
EST: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCCEST: gi|86414045|gb|CI068252.1|CI068252
genomic: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
EST: TCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCCEST: gi|29660023|gb|CB656298.1|CB656298
genomic: TCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
EST: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCCEST: gi|58676883|gb|CK065570.1|CK065570
genomic: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
EST: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCCEST: gi|58684643|gb|CK073330.1|CK073330
genomic: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
EST: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAG GTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
genomic: TTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagc ... gcctttgtagGTCATATTGAATGATCCTTTCCTGGGAAAGCGCATTGAGGAAGGGAATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCACAGCTACAAGGATCCCATTACTGAATTTCTGGAATGCTTGTTTGTTAACTATGATTTTGATGGCGCACAACAGAAACTCATAGAGTGTGAGGAGgtatattagcgcgtcttgaaccttttgtccatccccatgattaatctgttttttacttaatgcattattgttgaaatataaaatattgaaagataatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcccc