Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtacctttttgatcaattttcagactagcaaaaagcatttgtaatgccatgaagagtagtgcttaccatgagtaatgagatctttctaggtgcattattt...

Basic information

species Oryza sativa
transcript LOC_Os07g07240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G022206_T01 (Zea mays), 5'ss of exon 2
TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttt------ttgatcaa--ttttcagactagcaaaaagcatttgtaatgccatgaagagtagtgcttaccatgagtaatgagatctttctaggtgcattattt
| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||       |||| ||   ||||     |   |||| |||| |||| ||   |      || |   || | | ||     || | ||| |||   ||| |   
TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgcactggttgagcagactttttccggtgcaaaaatgcatgtgtagtg---taggtgctaattgctaac-tcagcgtcaaggt-tttatagtatcataa---

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G074479_T06 (Zea mays), 5'ss of exon 2
TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttt-------ttgatcaattttcagactagcaaaaagcatttgtaatgccatgaagagtagtgcttaccatgagtaatgagatctttctaggtgcattattt
| ||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||| || ||||||||||        |||| ||  |||   | |   |||| | || | || ||  || | |  ||   |     | ||||  |   | | |       || ||    
TATATGCTGATGGAAGCATCTGTTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAGgtaccttgcactttgttgagcagattttttagtgcaaaaatggatgtttagtg--ataatggctaactcac-ttaagagttttatcaacatcaacatagcctt----

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G074479_T04 (Zea mays), 5'ss of exon 4
TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttt-------ttgatcaattttcagactagcaaaaagcatttgtaatgccatgaagagtagtgcttaccatgagtaatgagatctttctaggtgcattattt
                                      ||||||||||| |||||||||||||||||||| || || ||||| || ||||||||||        |||| ||  |||   | |   |||| | || | || ||  || | |  ||   |     | ||||  |   | | |       || ||    
--------------------------------------AACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAGgtaccttgcactttgttgagcagattttttagtgcaaaaatggatgtttagtg--ataatggctaactcac-ttaagagttttatcaacatcaacatagcctt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86595123|gb|CI260362.1|CI260362
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|58589089|gb|CF987397.1|CF987397
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAA
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAA
EST: gi|86418093|gb|CI032302.1|CI032302
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33823817|gb|CF337715.1|CF337715
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCTATTCAG                         TCTTTGCTGTGTGATCCCAACCCCCAACT-TCCAGCAAACTCAGAAGCTGC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGAT-CCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGC
EST: gi|87030405|gb|CI252682.1|CI252682
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88961954|gb|CI097107.1|CI097107
EST:     ACCAGTGGAGCCCNATATATGATGTTGCTGCCATATGGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86529619|gb|CI169825.1|CI169825
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88544469|gb|CI472570.1|CI472570
EST:     CCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33829483|gb|CF340565.1|CF340565
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGC
EST: gi|88958477|gb|CI095993.1|CI095993
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86512672|gb|CI155305.1|CI155305
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|87018548|gb|CI252302.1|CI252302
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86510309|gb|CI152942.1|CI152942
EST:     ACCAGTGGAGCCCGATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|58589326|gb|CF987634.1|CF987634
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|87013135|gb|CI281649.1|CI281649
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33815914|gb|CF333803.1|CF333803
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAANCCCCAACTCTCCAGCAAACTCAGAAGCTGC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAA-CCCCAACTCTCCAGCAAACTCAGAAGCTGC
EST: gi|396941349|gb|HO188558.1|HO188558
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86855364|gb|CI265290.1|CI265290
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33824614|gb|CF338120.1|CF338120
EST:     AGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAAACCCCAACTCTCCAGCAAACTCAGAAGCTGC
genomic: AGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCC-AAACCCCAACTCTCCAGCAAACTCAGAAGCTGC
EST: gi|88205838|gb|CI205687.1|CI205687
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88210548|gb|CI210397.1|CI210397
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATGGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTTTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88206144|gb|CI205993.1|CI205993
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86257132|gb|CI061895.1|CI061895
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|58602468|gb|CK012996.1|CK012996
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|58594410|gb|CF992718.1|CF992718
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86601347|gb|CI251721.1|CI251721
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88962748|gb|CI023848.1|CI023848
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88210457|gb|CI210306.1|CI210306
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|58597267|gb|CK007795.1|CK007795
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88244873|gb|CI242724.1|CI242724
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86592637|gb|CI253318.1|CI253318
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|15008457|gb|AU222845.1|AU222845
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86882931|gb|CI314209.1|CI314209
EST:     ACCAGTGGACCCCTATATATGATGTTTCTGCCATATT-ACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86595209|gb|CI260448.1|CI260448
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86599452|gb|CI251410.1|CI251410
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|8955795|gb|BE229600.1|BE229600
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33661350|gb|CF292317.1|CF292317
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88216283|gb|CI216132.1|CI216132
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86870896|gb|CI326722.1|CI326722
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATA-TGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|15850323|gb|BI798599.1|BI798599
EST:     CTATATATGATGTT-CTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|87031523|gb|CI263896.1|CI263896
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88518845|gb|CI445691.1|CI445691
EST:     GACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: GACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88984581|gb|CI009363.1|CI009363
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCCAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|89162971|gb|CI099861.1|CI099861
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88364559|gb|CI612374.1|CI612374
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAA
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAA
EST: gi|218486911|gb|FG967738.1|FG967738
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|87011703|gb|CI281405.1|CI281405
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|3767492|gb|AU031602.1|AU031602
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88382147|gb|CI533351.1|CI533351
EST:     CATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88210425|gb|CI210274.1|CI210274
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|87031977|gb|CI268206.1|CI268206
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|27577517|gb|CB000212.1|CB000212
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|55411170|gb|CV723546.1|CV723546
EST:     CCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86593653|gb|CI266333.1|CI266333
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33823815|gb|CF337714.1|CF337714
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCTATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|89163934|gb|CI101022.1|CI101022
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88258321|gb|CI360907.1|CI360907
EST:     CCATATTGACTTCAAGTCAG                         TCTGTGCTGTGGGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|218500131|gb|FG955693.1|FG955693
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88258661|gb|CI361247.1|CI361247
EST:     CTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|55409265|gb|CV721641.1|CV721641
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86425703|gb|CI070800.1|CI070800
EST:     ATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTGCTCGGAGCAAACCCAGAAGCTG
genomic: ATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACT-CTC-CAGCAAACTCAGAAGCTG
EST: gi|88850544|gb|CI093225.1|CI093225
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88902902|gb|CI088440.1|CI088440
EST:     ACCAGTGGAGCCCGATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|218478273|gb|FG948223.1|FG948223
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86855761|gb|CI269088.1|CI269088
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88465565|gb|CI522316.1|CI522316
EST:     CTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|89166601|gb|CI103887.1|CI103887
EST:     ACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|163921046|gb|EG714082.1|EG714082
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|88253640|gb|CI352266.1|CI352266
EST:     CCTATATATGATATTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: CCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|7608720|gb|AU090501.1|AU090501
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|86524958|gb|CI165164.1|CI165164
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
EST: gi|33661144|gb|CF292111.1|CF292111
EST:     ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG                         TCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 75 (downstream exon)
Score: 62

TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtaccttttt ... tgctttgcagTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCCAGACTGTTTAGTGAGAACAAGCGAGAGTACAACCGCAAGGTTCGTGAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAGgtacctttttgatcaattttcagactagcaaaaagcatttgtaatgccatgaagagtagtgcttaccatgagtaatgagatctttctaggtgcattattt

- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC