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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTCAAAAACGATTGAAGGAGATGTCAGACCGAAGATTTCTTGATGCAAACGGGCAATCTGACTTCAGTTTCAAGGATTCCTATGGAAAGGATAAGgtgattcctcagcgtctaaattttttctgccttcttttctcatggcatgatttttattcggcatcagtgatcagcattaactgctgtatttttttataag...

Basic information

species Oryza sativa
transcript LOC_Os07g07194.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07194.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G435034_T01 (Zea mays), 5'ss of exon 3
---------------TGATGTTCAAAAACGATTGAAGGAGATGTCAGACCGAAGATTTCTTGATGCAAACGGGCAATCTGACTTCAGTTTCAAGGATTCCTATGGAAAGGATAAGgtgattcctcagcgtctaaattttttctgccttcttttctcatggcatgatttttattcggcatcagtgatcagcattaactgctgtattt---ttttataag------
                || |||||||||||||||||||||||||||||  | ||||||||||||||||| | ||||| |||| | |||                | ||  || ||||| || |  ||| |        |||||  ||||| | | || |  ||   ||  |||   || || |||| |   ||||  |  |||||       |||||       
AACCTTGCAAGCTGTCGACGTTCAAAAACGATTGAAGGAGATGTCAGATAGTAGATTTCTTGATGCAAATGTGCAATATGACATGAGT---------------AGGAACAATCAGgtgctttccgagccttcg-----tttct-tcttctatccccagg--atttcttccatttaacaccattgattactgttaaa-gtggtattggaacagtataacttatta