1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGCCATGTCTCCTATGCAGTTTGCAGGAACTCCTGGCACCAATATCCCAAAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcacttcccttacaatcgttcatatctcttatgaagttattagttctctgtgcagtgatattttgccttgcgagttgttttctgtctaggcgaaca...
species | Oryza sativa |
transcript | LOC_Os07g07020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAACGACATGAGAAATGTCAT-GGTGAGCCAGGGTGGTAGAAAGAGAAA GATAGGGCTAGTGAAACTGTGGAAAATGGTGGTCAACTCAAGGACAACATTEST: gi|58612725|gb|CK040437.1|CK040437
genomic: AGAACGACATGAGAAATGTCATGGGTG-GACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATA-GGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATT
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|31818625|gb|CD645587.1|CD645587
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|88216493|gb|CI216342.1|CI216342
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|55436748|gb|CV731522.1|CV731522
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|88485759|gb|CI423030.1|CI423030
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|88279541|gb|CI400541.1|CI400541
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATTAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGGAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|218478500|gb|FG957069.1|FG957069
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|88478916|gb|CI416187.1|CI416187
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|55436749|gb|CV731523.1|CV731523
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|58663994|gb|CK052680.1|CK052680
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|88533877|gb|CI462476.1|CI462476
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|88409343|gb|CI559441.1|CI559441
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|86529504|gb|CI169710.1|CI169710
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|86497453|gb|CI140086.1|CI140086
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|27921088|gb|CB096896.1|CB096896
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTAGAAAATGCTGGTCAACTCAAGGACAACATTGEST: gi|25801128|gb|CA757089.1|CA757089
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
EST: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAA GATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACCACATTG
genomic: AAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcactt ... gtgactgtagGATAGGCTAGTGAAACTGTGGAAAATGCTGGTCAACTCAAGGACAACATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCATGTCTCCTATGCAGTTTGCAGGAACTCCTGGCACCAATATCCCAAAGAACGACATGAGAAATGTCATGGGTGGACAGGGTGGTAGAAAGAGAAAgtatgcacttcccttacaatcgttcatatctcttatgaagttattagttctctgtgcagtgatattttgccttgcgagttgttttctgtctaggcgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA