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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTGgtaaatcaaatcatcgatcaatcaatcgatcatatgctgtgttctgcaacattgtctcgatggatcgctgactctgagaccaatttggatcatcgtgtttag

Basic information

species Oryza sativa
transcript LOC_Os07g04520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g04520.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 5
GTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTGgtaaatcaaatcatcgatcaatcaatcgatcatatgctgtgttctgc-aacattgtctcgatggatcgctgactctgagaccaatttggatcatcgtgtttag
|  ||||||||||||||||||| ||||||||||| ||||| |||||| |||||  |||||| ||  |  |||| |   |||  |             |  |||| | | || || ||  || | |   | ||||      ||  | ||      |||  |              
GCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCAAATATTCTCTTGGACTTCAACTTTGATGCTATGgtga--taaactagtagcttg-----cattcatctacggttttttgttaagactacattgatgacattttgcatttg---tttattcag--------------