1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGCCACTCCAAAGCAAATCAGGGAGCTGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaattcaccactgttttttttgtttaccacaagattttcttcatcaatgttcagtaacaatcatgacttctcgcgacggatttgcgatgatactgatgtcgatttttgcgattctgattgcgcag
species | Oryza sativa |
transcript | LOC_Os07g02800.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|4714655|gb|AU055772.1|AU055772
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: GATGAAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|29685848|gb|CB682123.1|CB682123
genomic: GATG-AAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|29686226|gb|CB682501.1|CB682501
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|218500950|gb|FG958837.1|FG958837
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: GAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|86415400|gb|CI069803.1|CI069803
genomic: GAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|15846731|gb|BI795007.1|BI795007
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: GACTGACAAATGACGAGGTC-AAAGCCATCTTCAG AAGTACCGCCTGCACAACC-GCCGAGAGTGCCAAGCTCAACCATTGTGAACEST: gi|29659108|gb|CB655383.1|CB655383
genomic: GACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|29661590|gb|CB657865.1|CB657865
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACACCCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|86497398|gb|CI140031.1|CI140031
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|29674102|gb|CB670377.1|CB670377
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|86261029|gb|CI066704.1|CI066704
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|86521974|gb|CI162180.1|CI162180
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: GACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|3768098|gb|AU032125.1|AU032125
genomic: GACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: GTGGGTGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|87029253|gb|CI276521.1|CI276521
genomic: GTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|29675135|gb|CB671410.1|CB671410
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTCCCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|58610574|gb|CK038286.1|CK038286
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: ATGAAGGTGGATGGGACTGGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|86415246|gb|CI069649.1|CI069649
genomic: ATGAAGGTGGAT-GGACT-GACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACEST: gi|86859391|gb|CI278817.1|CI278817
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
EST: TGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAEST: gi|86823299|gb|CI256309.1|CI256309
genomic: TGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAG-TACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAA
EST: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAG AAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
genomic: TGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaa ... gattgcgcagAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCCACTCCAAAGCAAATCAGGGAGCTGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaattcaccactgttttttttgtttaccacaagattttcttcatcaatgttcagtaacaatcatgacttctcgcgacggatttgcgatgatactgatgtcgatttttgcgattctgattgcgcag
- - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - GATGGA